Pairwise Alignments

Query, 304 a.a., DNA polymerase III, delta prime subunit (RefSeq) from Shewanella loihica PV-4

Subject, 334 a.a., DNA polymerase III delta prime subunit (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  145 bits (367), Expect = 1e-39
 Identities = 94/264 (35%), Positives = 130/264 (49%), Gaps = 4/264 (1%)

Query: 4   PWLTPVCEAFCSQLISGQQGHAYLLGIHQGYGGMQLANTLAQASLCMAPRAIGACGVCKS 63
           PWL P  E       +G+  HA L+    G G   L   L++  LC  P    +CG C+ 
Sbjct: 5   PWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLCQQPEGHKSCGHCRG 64

Query: 64  CQLFIAGNHPDCYQLEADGNQ--IKVDQVRELCQKLTATAQQGGRRVAVIKNCERLNTAA 121
           CQL  AG HPD Y L  D  +  + VD VRE+ +KL   ++ GG +V  I +   L  AA
Sbjct: 65  CQLMQAGTHPDYYTLTPDKGKSSLGVDAVREVSEKLYEHSRLGGAKVVWIADAALLTDAA 124

Query: 122 ANALLKTLEEPGRETLLLLQSDTPSRLMATISSRCQRLHCQLPSREAVQEWLAAQFSLTS 181
           ANALLKTLEEP  +T   L S  P+RL+AT+ SRC+  H   PS      WL+ + + + 
Sbjct: 125 ANALLKTLEEPPEQTWFFLASPEPARLLATLRSRCRLHHLAPPSESYAMSWLSREVTASQ 184

Query: 182 D--VTWCLPVVGGPVDLLTALNDGRYEALIGLRKAWVQSLSSGHLCANLTNIDEKQVSDA 239
           +  +T      G P   L  L   R+     L +A + SL +G   A LT ++ +Q    
Sbjct: 185 EALLTALRLNAGSPGAALALLQSERWAQREALCQALMDSLHTGDWYAVLTALNHEQAPAR 244

Query: 240 LKVLYVVLRQKLVKQKNADALINI 263
           L  L  +L   L +Q  A  L N+
Sbjct: 245 LHWLATLLVDALKRQHGASYLTNV 268