Pairwise Alignments

Query, 304 a.a., DNA polymerase III, delta prime subunit (RefSeq) from Shewanella loihica PV-4

Subject, 334 a.a., DNA polymerase III subunit delta' (NCBI) from Escherichia coli BW25113

 Score =  137 bits (345), Expect = 3e-37
 Identities = 89/273 (32%), Positives = 131/273 (47%), Gaps = 4/273 (1%)

Query: 4   PWLTPVCEAFCSQLISGQQGHAYLLGIHQGYGGMQLANTLAQASLCMAPRAIGACGVCKS 63
           PWL P  E   +   +G+  HA L+    G G   L   L++  LC  P+   +CG C+ 
Sbjct: 5   PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG 64

Query: 64  CQLFIAGNHPDCYQL--EADGNQIKVDQVRELCQKLTATAQQGGRRVAVIKNCERLNTAA 121
           CQL  AG HPD Y L  E   N + VD VRE+ +KL   A+ GG +V  + +   L  AA
Sbjct: 65  CQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAA 124

Query: 122 ANALLKTLEEPGRETLLLLQSDTPSRLMATISSRCQRLHCQLPSREAVQEWLAAQFSLTS 181
           ANALLKTLEEP  ET   L +  P RL+AT+ SRC+  +   P  +    WL+ + +++ 
Sbjct: 125 ANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQ 184

Query: 182 DVTWCL--PVVGGPVDLLTALNDGRYEALIGLRKAWVQSLSSGHLCANLTNIDEKQVSDA 239
           D          G P   L       ++A   L +A   S+ SG   + L  ++ +Q    
Sbjct: 185 DALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQAPAR 244

Query: 240 LKVLYVVLRQKLVKQKNADALINIKITKFAAKV 272
           L  L  +L   L +   A  + N+ +    A++
Sbjct: 245 LHWLATLLMDALKRHHGAAQVTNVDVPGLVAEL 277