Pairwise Alignments

Query, 478 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella loihica PV-4

Subject, 481 a.a., deoxyribodipyrimidine photolyase from Pseudomonas simiae WCS417

 Score =  367 bits (942), Expect = e-106
 Identities = 203/479 (42%), Positives = 276/479 (57%), Gaps = 19/479 (3%)

Query: 4   LLWLRRDFRLHDNPALSEAVRLRVKQALFIATPAQWQQHDMAPIKADLIRRHLELMAGEL 63
           L+WLR D RLHDN AL+ A +     A+++ TP QWQ HD AP K D   R+L+ ++  L
Sbjct: 3   LIWLRTDLRLHDNTALAAASQRGPIAAVYLITPQQWQSHDDAPCKVDFWLRNLQDLSKTL 62

Query: 64  AEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERD----KQVMAAGI 119
               I L+I +A  +     VL   CR+  V+ +  N E  + E  RD    K + A G+
Sbjct: 63  GALNIPLLIRTAATWDQAPDVLSKLCRELSVESVHVNEEYGIHESRRDAAVSKALEADGV 122

Query: 120 DLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPVKSIGD 179
               + +     PGSVL + G  F+VF+ F+K     + +     V  P    P+K    
Sbjct: 123 TFHRYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYTRLHSALPRMVAAPKAQAPLK---- 178

Query: 180 AQAASQLPQQPTPQSSSINLDYPLVDSGR--WPDSEQVMGQLLPHFWQDKLLNYGERRDF 237
                 L   P P  +++    P  DS R  WP  E    + L  F   ++  Y + RDF
Sbjct: 179 ------LKSDPVP--NTVEGFAPPSDSLRALWPAGEDEARRRLDAFADQQISYYKDERDF 230

Query: 238 PAIKGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLLF 297
           PA  GTS LS YLA G +S R      +Q +         GA TW+NEL+WR+FYKH+L 
Sbjct: 231 PAKPGTSQLSAYLAAGVVSPRQCLHAALQTNGGEFESGDLGAITWINELLWREFYKHILV 290

Query: 298 HYPELIKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRMI 357
            YP + +  +F+P+ E++ W N      AW E RTG PI+DAAM+QL  TGWMHNRLRM+
Sbjct: 291 GYPRVSRHRAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMV 350

Query: 358 VASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQSQ 417
           VA FLTK+LL+DW +GERFFM+ LIDGD +ANNGGWQW++STG D+ PYFRIF+P++QS+
Sbjct: 351 VAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSE 410

Query: 418 KFDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALAFYK 476
           KFD  G FI+ +LPEL  +  K +H P       G A+ YP  IVD K +R+RALA ++
Sbjct: 411 KFDAEGVFIKHWLPELAALNKKDVHNPEAAGGLFGVAD-YPRSIVDLKKSRERALAAFR 468