Pairwise Alignments

Query, 478 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella loihica PV-4

Subject, 458 a.a., Deoxyribodipyrimidine photolyase (EC 4.1.99.3) from Sphingobium sp. HT1-2

 Score =  214 bits (545), Expect = 5e-60
 Identities = 153/479 (31%), Positives = 236/479 (49%), Gaps = 36/479 (7%)

Query: 4   LLWLRRDFRLHDNPALSEAVRLRVKQALFIATPAQWQQHDMAPIKADLIRRHLELMAGEL 63
           ++W R+D RL D  AL+ A +      L+I      +Q  M       +   L  +   L
Sbjct: 6   IIWFRQDLRLSDQAALAAAAQAGPVIPLYILDDESPRQWAMGGASRWWLHHSLASLDERL 65

Query: 64  AEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERDKQVMAAGIDLRL 123
              G  L++           VL    ++ G +++ A    E   +  +K V A  IDLRL
Sbjct: 66  RAKGSRLILRRGRCAD----VLAQVAKECGAQVVHAIRHHEPWWRNAEKGV-ARQIDLRL 120

Query: 124 WQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPVKSIGDAQAA 183
                +LP  +V    G  ++++TPF +A +       +   P P +  P +     +A 
Sbjct: 121 HDGGLLLPVEAVRTGGGTPYRIYTPFSRAVM-------LHMPPAPPQPAPQR----IEAP 169

Query: 184 SQLPQQPTPQSSSINLDYPLVDSG---RWPDSEQVMGQLLPHFWQDKLLNYGERRDFPAI 240
           S  P     +  ++    P   SG    W   E+   + L  F  + + +Y   RD P+ 
Sbjct: 170 SHWPDSDRLEGWNLLPRDPDWASGFPADWSPGEEGAKRYLDSFLGE-VGDYAVARDLPSQ 228

Query: 241 KGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLLFHYP 300
           +GTS LSP+L  G IS   +  ++ +   +        A  +L ELIWRD+  + ++  P
Sbjct: 229 EGTSRLSPHLHFGEISPAKVWHRVAKAPGD--------ATVYLKELIWRDYAHNQVWALP 280

Query: 301 ELIKGGSFQPKYESLPWPN-NEAH--FQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRMI 357
                 + QP ++++ W +  EA   + AW  G+TGYPIVDA M+QL +TGWMHNR+RMI
Sbjct: 281 AYGSENA-QPAFDAMHWRDLREARGDWTAWKRGQTGYPIVDAGMRQLWQTGWMHNRVRMI 339

Query: 358 VASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQSQ 417
            ASFL KHLL+DW  G R+F   L+D D++ N+  WQW A +G DA  + RI  P+TQS 
Sbjct: 340 AASFLIKHLLIDWRHGARWFWDTLVDADYANNSVNWQWVAGSGVDANLFTRIMAPLTQSD 399

Query: 418 KFDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALAFYK 476
           KFD   ++IR+++PEL  + D  IH P  +     +   YP   + H+  R+RAL  Y+
Sbjct: 400 KFD-AADYIRQWVPELAHLDDCVIHDPDFHGV---RPSSYPEKRIGHREGRERALTAYR 454