Pairwise Alignments

Query, 478 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella loihica PV-4

Subject, 480 a.a., deoxyribodipyrimidine photolyase from Pseudomonas putida KT2440

 Score =  361 bits (927), Expect = e-104
 Identities = 203/478 (42%), Positives = 273/478 (57%), Gaps = 17/478 (3%)

Query: 4   LLWLRRDFRLHDNPALSEAVRLRVKQALFIATPAQWQQHDMAPIKADLIRRHLELMAGEL 63
           L WLR D R+ DN ALS +       AL++ +P QWQ HD A  K D   R+L  +   L
Sbjct: 3   LTWLRSDLRIDDNTALSASTERGPTIALWLVSPGQWQAHDDADCKVDFWLRNLHDLRQSL 62

Query: 64  AEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERDKQVMA----AGI 119
            +  I L+I +   +    + + D CR H V+ +  N E  ++EQ RD    A    + I
Sbjct: 63  EKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRAMLEKSAI 122

Query: 120 DLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPVKSIGD 179
                 +     PG+VL + G+ F+VF+ FKK  L+ +          PA +  VK    
Sbjct: 123 QAHSHLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRS------LPALARRVKR--- 173

Query: 180 AQAASQLPQQPTPQS-SSINLDYPLVDSGRWPDSEQVMGQLLPHFWQDKLLNYGERRDFP 238
            QA   +   P PQ         P +    WP  E      L  F  + + +Y   RD P
Sbjct: 174 -QAPLNIGSDPIPQHVEGFGKTTPALRD-HWPAGEAEAQSRLSRFLDETIDDYHHLRDLP 231

Query: 239 AIKGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLLFH 298
           A  GTS LSPYLA G IS R      +  +         G  TW+NEL+WR+FYKH+L  
Sbjct: 232 AKPGTSQLSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSG 291

Query: 299 YPELIKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRMIV 358
           YP++ +  +F+ + E+LPW +  A   AW +GRTG+PI+DAAM+QL  TGWMHNRLRM+V
Sbjct: 292 YPQVSRHRAFRAQTEALPWRDAPADLAAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVV 351

Query: 359 ASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQSQK 418
           A FL+K+LL+DW KGER FM+ LIDGD +ANNGGWQW+ASTG DA PYFRIFNP++QSQ+
Sbjct: 352 AMFLSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQR 411

Query: 419 FDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALAFYK 476
           FDP+G FIR ++PEL+E+ +K IH P       G    Y +PIVD  ++RQRAL  +K
Sbjct: 412 FDPQGRFIRHWVPELQELDEKAIHQPIKSTDLFGNTS-YLSPIVDLSSSRQRALEAFK 468