Pairwise Alignments

Query, 609 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

Subject, 610 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens GW456-L13

 Score =  643 bits (1659), Expect = 0.0
 Identities = 320/609 (52%), Positives = 436/609 (71%)

Query: 1   MFKRFESWVSALPDQEAVQPPRGIYRFCRHYTRGFELPLALMSILTALLAILEVSLFAFM 60
           +++RFE  +    +     PP  ++ F  +Y +      A + I+  + A++EV+LF+++
Sbjct: 2   LYRRFEKLIDVFREAPTASPPDRVFPFYTYYLKQVWPSFAALLIVGLIGALIEVALFSYL 61

Query: 61  GDLVDLLASHSPETLFAEQGDKLLLMAVLVLVVIPVLVLLHALVIYQGLLGNYPMSIRWL 120
             ++DL        LF +   +L  M V+ LV+ P+ V LH L+++Q L  +    IRW 
Sbjct: 62  SRIIDLAQGTPNINLFQDHALELTWMVVVALVLRPIFVGLHDLLVHQTLSPSMTSMIRWQ 121

Query: 121 AHRYLLKQSIAFYQNDFAGRIATKVMQTSLAVRETVTKLLDVLVYILVYFLSMLVIIADA 180
            H Y+LKQS+ F+QNDFAGRIA ++MQT  ++R++  + +D L ++L+Y +S LV+ A+A
Sbjct: 122 NHSYVLKQSLNFFQNDFAGRIAQRIMQTGNSLRDSAVQAVDALWHVLIYAISSLVLFAEA 181

Query: 181 DLRLMLPMLVWLMIYVGLQFYYLPKLKQVSTEQADARSTMTGRIVDSYTNIATVKLFSHT 240
           D RLM+P+L W+  ++G   Y++P++K  S   +DARS + GRIVD YTNI T+KLF+HT
Sbjct: 182 DWRLMIPLLTWIFAFIGALCYFVPRVKDRSVVASDARSKLMGRIVDGYTNITTLKLFAHT 241

Query: 241 QKEAQYAKESMTGFLDTVYRQMRLVTGINVSVQVINYLLAFSVAAVSIWLWRDNAITIGA 300
             E QYA+E++    +      R+VT ++V +  +N LL      +++WLW  + I++GA
Sbjct: 242 NFEQQYAREAIKEQTEKAQLAGRVVTSMDVVITSMNGLLIVCTTGLALWLWTQSLISVGA 301

Query: 301 IAVAVSLSLRLNGMSQWIMWEISSLFENIGTVADGMNTLSRPTSVQDSDNASQLTVSKGE 360
           IA+A  L +R+  MS WIMW ++ +FENIG V DG+ T+S+P SV D D A  L V++GE
Sbjct: 302 IALATGLVIRIVNMSGWIMWVVTGIFENIGMVQDGLQTISQPVSVTDRDQAKPLAVARGE 361

Query: 361 IAFNRVSFHYGEASGVIEDLDLKIKPGEKVGLVGRSGAGKSTLVNLLMRFHDVEQGSITI 420
           + F +V FHYG+ SG+I DL+L IK GEK+GL+G SGAGKSTLVNLL+R +DVE G I I
Sbjct: 362 VRFEQVDFHYGKQSGIIGDLNLSIKAGEKIGLIGPSGAGKSTLVNLLLRLYDVEGGRILI 421

Query: 421 DGQNIREVEQDSLRANIGMVTQDTSLLHRSIRDNIRYGKPDASEEELENAIRQAQAYEFI 480
           DGQNI +V Q+SLR  IGM+TQDTSLLHRSIRDN+ YGKPDA++ +L  A+ +A+A  FI
Sbjct: 422 DGQNIADVSQESLRERIGMITQDTSLLHRSIRDNLLYGKPDATDAQLWEAVHKARADGFI 481

Query: 481 QGLSDPEGNHGLDAQVGERGVKLSGGQRQRIAIARVLLKNAPILLLDEATSALDSEIEAA 540
             LSD EG  G DA VGERGVKLSGGQRQRIAIARVLLK+APIL++DEATSALDSE+EAA
Sbjct: 482 PSLSDAEGRTGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILIMDEATSALDSEVEAA 541

Query: 541 IQESLYQLMEGKTVIAIAHRLSTIAAMDRLIVLDQGKIVEQGTHQELIKQGGIYAQLWAH 600
           IQESL  LM+GKTVIAIAHRLSTIA MDRL+VL+ GKI E GTH EL+  GG+YA+LW H
Sbjct: 542 IQESLETLMQGKTVIAIAHRLSTIARMDRLVVLENGKIAETGTHAELLAHGGLYARLWQH 601

Query: 601 QTGGFLGIE 609
           QTGGF+GI+
Sbjct: 602 QTGGFVGID 610