Pairwise Alignments

Query, 336 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) from Shewanella loihica PV-4

Subject, 331 a.a., C4-dicarboxylate-binding periplasmic protein DctP from Pseudomonas sp. DMC3

 Score =  348 bits (893), Expect = e-100
 Identities = 181/318 (56%), Positives = 228/318 (71%), Gaps = 2/318 (0%)

Query: 21  ALLGASLNSWAA--PTEIKFSHVVAENTPKGQMALKFKQLVEERLPGEYQVNVFPNSQLF 78
           AL  +S+N   A  P  IKFSHVVA+ TPKGQ AL FK+LVEERLPG+ +V V+PNS LF
Sbjct: 12  ALAVSSMNPAMAADPVIIKFSHVVADQTPKGQGALLFKKLVEERLPGKVKVEVYPNSSLF 71

Query: 79  GDNNELSALLLNDVQFVAPSLSKFERYTKKLQLFDLPFLFKDMDAVNRFQQSDAGQQLLN 138
           GD  E+ ALLL DVQ +APSL+KFE+YTK +QLFDLPFLF D++AV+RFQ S  GQ LL 
Sbjct: 72  GDGKEMEALLLGDVQMIAPSLAKFEQYTKSVQLFDLPFLFNDINAVDRFQLSPQGQGLLK 131

Query: 139 SMKRKGVVGLGYLHNGMKQFSASSPLVLPEDAQGKKFRIMASDVLAAQFQAVEAIPVKKP 198
           SM+ K + GL Y HNGMKQ SA+ PL +P DA+G KFR+ AS VL  QF+AV A P K  
Sbjct: 132 SMESKNITGLAYWHNGMKQLSANKPLRVPADARGLKFRVQASAVLEEQFKAVRANPRKMS 191

Query: 199 FSEVFTLLQTRAIDGQENTWSNIYSKKFYEVQSNITESNHGVLDYMVVTSNTFWKSLPAD 258
           F+EV+  LQT  ++G EN +SNIYS+K +EVQ  ITESNHGVLDYM++T+  FW  LP D
Sbjct: 192 FAEVYQGLQTGVVNGAENPYSNIYSQKMHEVQKYITESNHGVLDYMLITNTKFWNGLPPD 251

Query: 259 KRKVIKASLDEAIAYGNEIAAAKVNKDKQAIIDSKRSEVTYLTPEQRAAWVNAMKPVWAQ 318
            R  +   + E   + N+ A      DKQ I+ +K +E+  LTPE+RA W +AMKPVW +
Sbjct: 252 VRSELDKIVVEVTTHVNKEAQQLNEGDKQRILAAKTTEIITLTPEERAQWRDAMKPVWKK 311

Query: 319 FEDKIGKDLIDAAVASNE 336
           FE +IG +LI AA A+N+
Sbjct: 312 FEGEIGAELISAAEAANQ 329