Pairwise Alignments

Query, 336 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data) from Shewanella loihica PV-4

Subject, 328 a.a., 2,3-diketo-L-gulonate-binding periplasmic protein YiaO from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  130 bits (327), Expect = 5e-35
 Identities = 93/324 (28%), Positives = 161/324 (49%), Gaps = 10/324 (3%)

Query: 10  IKQIVKMTSIAALLGASLNSWAAPTEIKFSHVVAENTPKGQMALKFKQLVEERLPGEYQV 69
           ++ +     IA L   S +S AA + ++F +  ++   +   A KF  L++ER  GE ++
Sbjct: 3   LRSVTYALFIAGLAAFSTSSLAAQS-LRFGYETSQTDSQHIAAKKFNDLLQERTKGELKL 61

Query: 70  NVFPNSQLFGDNNELSALLLNDVQFVAPSLSKFERYTKKLQLFDLPFLFKDMDAVNRFQQ 129
            +FP+S L      +S +    +       + F   +  + L D+PFLF+D    ++   
Sbjct: 62  KLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDVPFLFRDTAHAHKTLD 121

Query: 130 SDAGQQLLNSMKRKGVVGLGYLHNGMKQFSAS-SPLVLPEDAQGKKFRIMASDVLAAQFQ 188
              G  L  S++ KG+  L Y  NG +  + S +P+  P D +G K R   S +  A F+
Sbjct: 122 GKVGDDLKASLEGKGLKVLAYWENGWRDVTNSRAPVKTPADLKGLKIRTNNSPMNIAAFK 181

Query: 189 AVEAIPVKKPFSEVFTLLQTRAIDGQENTWSNIYSKKFYEVQSNITESNHGVLDYMVVTS 248
              A P+  PF+EV+T L+TR ID QE+  + ++S KF+EVQ  ++ ++H     +VV +
Sbjct: 182 VFGANPIPMPFAEVYTGLETRTIDAQEHPINVVWSAKFFEVQKFLSLTHHAYSPLLVVIN 241

Query: 249 NTFWKSLPADKRKVIKASLDEAIAYGNEIAAAKVNKDKQAIIDS-KRSEVTYLTPEQRAA 307
              +  L  + ++ + +S  EA  Y  ++ A    +D+Q IID  K + V  +T   R A
Sbjct: 242 KAKFDGLSPEFQQALVSSAQEAGNYQRKLVA----EDQQKIIDGMKEAGVEVITDLDRKA 297

Query: 308 WVNAMKPVWAQFEDKIGKDLIDAA 331
           + +A+     Q  D   KD+   A
Sbjct: 298 FSDAL---GNQVRDMFVKDVPQGA 318