Pairwise Alignments

Query, 212 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) from Shewanella loihica PV-4

Subject, 232 a.a., TRAP transporter small permease from Magnetospirillum magneticum AMB-1

 Score = 73.9 bits (180), Expect = 2e-18
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 34/191 (17%)

Query: 4   RFFSHIEEVVLNALITAMTLLVFVEVIARFFFNTGFL----------WIQELTLTICGWF 53
           R   H+EE ++  L+   TL++FV V+ R+   T  L          W QEL + +  W 
Sbjct: 2   RALDHLEEWLIAFLMGTATLIIFVAVLQRYAAGTALLYPLVGHLDFSWAQELCIIMFVWM 61

Query: 54  VLFGMSYGVKVGAHIGVDAFVKKLPAQGRKYTAILAVAICLIYCGM-------FLVGSWD 106
             FG +YGV+ G H+GVD  + +L  Q R    +  +    ++ G+       F++ +  
Sbjct: 62  AKFGAAYGVRTGIHVGVDVVINRLDPQWRAKLIVFGLLAGALFTGIVATMGGHFVMENGA 121

Query: 107 YLAKMYQIGVPMEDIDLPHFLIGGLDGDFAWEYLRIDVEEPAVPLWTSQSILLIGFILLT 166
           + A ++  G+P               GD     +  D+E    P W   S + +G  L+ 
Sbjct: 122 HYAFLHAFGLP--------------TGDLYEGPITPDME---APTWVVYSAIPLGSALMC 164

Query: 167 WRFLQLALAII 177
           +RFLQ+ +  I
Sbjct: 165 FRFLQVCVGFI 175