Pairwise Alignments

Query, 607 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

Subject, 633 a.a., C4-dicarboxylate transport sensor protein DctB from Pseudomonas sp. DMC3

 Score =  280 bits (717), Expect = 1e-79
 Identities = 183/617 (29%), Positives = 318/617 (51%), Gaps = 59/617 (9%)

Query: 20  ILLGLAFTLRVAYWFHLEHGYEMTRQQSNAQMKELLSFLSGSLSRYESIPHVLSTNPLLA 79
           +++GL F   + +W     G     +    Q++     +   +S+Y  +P +L     + 
Sbjct: 34  LMVGLGF---IGFWTSEHFGIRSLGENGQRQLELHARAVESEISKYTYLPSLLELETSVP 90

Query: 80  SALLKQDDPDTITPLNRYLEEIQSITEALDIYLVNIDGDAIAASNWQQSYSFIGKNYAFR 139
             LL    P+    +N YLE +   + +  IY+++  G  +A SNW+   S++G++ +FR
Sbjct: 91  Q-LLADPTPEHRQTVNDYLEGLNRRSRSRAIYVMDTTGRVMATSNWRDVDSYLGEDLSFR 149

Query: 140 PYFKDAIEGKMGRYFAVGTSSNKRGYYFSYPIYSHGYPVTPSQGEAKVLGAIVVKVDVTE 199
            YFKDA+ G+ GR++ +G+++ + GYY ++ +  HG          K++G  VVKV +  
Sbjct: 150 AYFKDAVRGQPGRFYGIGSTNGEPGYYLAHGLEEHG----------KIIGVAVVKVRLEA 199

Query: 200 IEQQSTGMARGSNYEFAISDPDHIIFLSSRPEWRLTALTPVTHQLKQRIESSRRY---AN 256
           +E++     + +  E  +SD + II LSS P  RL ++ P++ ++K+++  S +Y     
Sbjct: 200 MEERW----QRARLEAFVSDENGIIILSSDPARRLKSVIPLSDEVKEKLARSLQYYWFPL 255

Query: 257 REISPLAIEPPFAPSLAADYQIY------QIGDDKRGAEFMDNAAYMSDAGWQVHILSPM 310
            E+ PLA E     +LA   +        ++  D+    ++     +SD  W   +L+P+
Sbjct: 256 NELQPLARE-----TLAEGVEKLTFPANSELQPDEDDISYLAQTRLLSDTPWNFTLLTPL 310

Query: 311 TPIYRSLPPLLLLYGALYLLCALALLFAIEKRK-------NTRRMQQAHEQLEQRVKERT 363
             + R      +L    + L A  L+   E+RK           +Q+A+ QLE+R+ ERT
Sbjct: 311 QDLRREAINQGILVAVAFALFAFLLIAWNERRKVLATRLAAREALQEANSQLERRITERT 370

Query: 364 QALETSHQQLKE--------------AQDELIQAAKLTVIGSLSASINHEINQPLAAIRS 409
             L  S+++LK               AQDEL+QA KL  IG +S SI HE+NQPLAA+R+
Sbjct: 371 ADLRASNERLKSQIRERRQAEETLRRAQDELVQAGKLAAIGQMSTSIAHELNQPLAAMRT 430

Query: 410 YAQNTQTLLSRAKWDDVSSNIMTIIELTDRLAAIVSQFKSFTRKSQGNDKAISVAQCIRD 469
            + NT   L R + D  S+N+ TI +L DR+  I +  +SF R+     +A S+ + +  
Sbjct: 431 LSGNTVRFLERGQLDVASTNLKTINDLIDRMGRITASLRSFARRGDNKGQA-SLGKAVDA 489

Query: 470 ALTIVQPEVDKQGIDLVLNNTECQTLLWGDPIRLQQVLINLMSNAMVAMRANNPKQL-II 528
           AL ++   V+   + +     + Q L+  D  RL+Q+L+NL+ NA+ AM A    QL + 
Sbjct: 490 ALQVLGARVENTALQIHRQFADVQLLI--DQTRLEQILVNLIGNALDAMHAQPQPQLWLE 547

Query: 529 GVVVSNRLEITIEDTGTGIDESQMQKIFDPYYTS--SRQGLGLGLSISRRIVEAMQGKIS 586
           G   + +  + + D G GID    + +F+P++T+    QGLGLGL++S  +  A  G + 
Sbjct: 548 GEEFNGKYRLRVRDNGHGIDAEARKHLFEPFFTTKPGEQGLGLGLTLSASLAAATGGHLG 607

Query: 587 VANRQQGGAIFQITLPI 603
           V +   GG  F ++LP+
Sbjct: 608 VEHPAGGGTTFVLSLPL 624