Pairwise Alignments

Query, 920 a.a., polysaccharide export protein (RefSeq) from Shewanella loihica PV-4

Subject, 558 a.a., KpsD protein from Escherichia coli BL21

 Score = 93.6 bits (231), Expect = 3e-23
 Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 22/260 (8%)

Query: 116 FGYELFQGEPTTFAPVSDVPVPGEYLVGPGDRIKVQLFGKENKEYDLVINREGSIQFPEL 175
           FG +LF G  T+    + V    +Y++ PGD I+V+L+G    +  L I+ +G+I  P +
Sbjct: 69  FGAQLFNG--TSADSGATVGFNPDYILNPGDSIQVRLWGAFTFDGALQIDPKGNIFLPNV 126

Query: 176 GPISVAGLSFAELRESLSHRISQ-QMIGIESNITMGELRSIRIFIAGDAYKPGSYTVSSL 234
           GP+ VAG+S ++L   ++ ++ +     +    ++ + + +++++ G    PG Y   + 
Sbjct: 127 GPVKVAGVSNSQLNTLVTSKVKEVYQSNVNVYASLLQAQPVKVYVTGFVRNPGLYGGVTS 186

Query: 235 STITQALFVAGGVN-EIGSLRNIQVKRNGKLVGSMDLYDLLMRGDASGDIRLRSGDVVFI 293
            ++   L  AGGV+ E GS  +I VKR  ++  +++LYD L+ G   G  +   GD + +
Sbjct: 187 DSLLNYLIKAGGVDPERGSYVDIVVKRGNRVRSNVNLYDFLLNGKL-GLSQFADGDTIIV 245

Query: 294 PPVGGLVSITGEVRRPAIYELKRNETVADIVAMAAGVKPGA-----------------YP 336
            P     S+ G+V     +E + +          A  KPGA                 YP
Sbjct: 246 GPRQHTFSVQGDVFNSYDFEFRESSIPVTEALSWARPKPGATHITIMRKQGLQKRSEYYP 305

Query: 337 KSSSIERYNSNGLRSIVNVD 356
            SS+  R   NG   IV+ D
Sbjct: 306 ISSAPGRMLQNGDTLIVSTD 325



 Score = 56.6 bits (135), Expect = 4e-12
 Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 19/198 (9%)

Query: 728 RESVRQQEQ----LEIKKLADQLRRDIATRGVSKDGNVVNYSDAKMMLTDLENIKAVGRL 783
           R SV Q+++    L ++KL +     ++ +  +K+   +   +A++    +    A  R 
Sbjct: 375 RPSVAQRQKEMLNLSLQKLEEA---SLSAQSSTKEEASLRMQEAQL----ISRFVAKART 427

Query: 784 VVDLSAISIGIEQAD-IQLEDQDILYVPSVKQTIAVMGEVQHAATHRFKEGLTLDQYLEM 842
           VV    + +     D + LED D++ +P     I V GEV       +++G+T + Y+E 
Sbjct: 428 VVPKGEVILNESNIDSVLLEDGDVINIPEKTSLIMVHGEVLFPNAVSWQKGMTTEDYIEK 487

Query: 843 SGGARERADEDRTYIIKANGSVLLPNRSMWFSSNTELNPGDTIIVPLDTEYKDNLTLWTQ 902
            GG  +++   R  +I+ NG+ +             L PGD I+V    E K N+ +   
Sbjct: 488 CGGLTQKSGNARIIVIRQNGAAVNA------EDVDSLKPGDEIMVLPKYESK-NIEVTRG 540

Query: 903 VTGIIYNSAVALATIAKL 920
           ++ I+Y  AV    I  L
Sbjct: 541 ISTILYQLAVGAKVILSL 558



 Score = 37.4 bits (85), Expect = 3e-06
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 630 AELTTTVIGSEESSVNHSSVNLDDALAGIDSANVVLSSRDILTVMTTPDWQENKAVEIRG 689
           A+L +  +    + V    V L+++   IDS  V+L   D++ +      ++   + + G
Sbjct: 415 AQLISRFVAKARTVVPKGEVILNES--NIDS--VLLEDGDVINIP-----EKTSLIMVHG 465

Query: 690 EVKFPGMYNIRRGETLADVIDRAGGFTQYAYLPSSVFVRES 730
           EV FP   + ++G T  D I++ GG TQ +     + +R++
Sbjct: 466 EVLFPNAVSWQKGMTTEDYIEKCGGLTQKSGNARIIVIRQN 506



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 208 TMGELRSIRIFIAGDAYKPGSYTVSSLSTITQA-LFVAGGVNEIGSLRNIQVKRNGKLVG 266
           +M ++ +++++    A +       SL  + +A L       E  SLR  + +   + V 
Sbjct: 364 SMSQMNAVQLYRPSVAQRQKEMLNLSLQKLEEASLSAQSSTKEEASLRMQEAQLISRFVA 423

Query: 267 SMDLY----DLLMRGDASGDIRLRSGDVVFIPPVGGLVSITGEVRRPAIYELKRNETVAD 322
                    ++++       + L  GDV+ IP    L+ + GEV  P     ++  T  D
Sbjct: 424 KARTVVPKGEVILNESNIDSVLLEDGDVINIPEKTSLIMVHGEVLFPNAVSWQKGMTTED 483

Query: 323 IVAMAAGV 330
            +    G+
Sbjct: 484 YIEKCGGL 491



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 76/370 (20%), Positives = 145/370 (39%), Gaps = 41/370 (11%)

Query: 300 VSITGEVRRPAIYELKRNETVADIVAMAAGVKP--GAYPKSSSIERYNSNGLRSIVNVDL 357
           V +TG VR P +Y    ++++ + +  A GV P  G+Y     I     N +RS VN+  
Sbjct: 169 VYVTGFVRNPGLYGGVTSDSLLNYLIKAGGVDPERGSYV---DIVVKRGNRVRSNVNLYD 225

Query: 358 TSTQGKSTKAQA--GDFIRVKNASGQFEDAITVVGAVVRPGKYQWFDGQKVSDLLPSLWG 415
               GK   +Q   GD I V    G  +   +V G V     +  +D +     +P +  
Sbjct: 226 FLLNGKLGLSQFADGDTIIV----GPRQHTFSVQGDV-----FNSYDFEFRESSIP-VTE 275

Query: 416 DLSISADLNYAIIVREVNRYGKVKVLQFSP-SRAIAEKDVTQDLLLAPRDKVMLFNYSDD 474
            LS +     A  +  + + G  K  ++ P S A        D L+   D+     Y+  
Sbjct: 276 ALSWARPKPGATHITIMRKQGLQKRSEYYPISSAPGRMLQNGDTLIVSTDR-----YAGT 330

Query: 475 TQNRYELNKLVKHRV------------KKVTSLTGDSLVGNDLFKAGFSQLDKMQLSQRS 522
            Q R E     +H +            +KV   +   +    L++   +Q  K  L+   
Sbjct: 331 IQVRVEGAHSGEHAMVLPYGSTMRAVLEKVRPNSMSQMNAVQLYRPSVAQRQKEMLNLSL 390

Query: 523 Q-IGGVVVAKEAPDDKEQLVKGEVNKMLANLFEDKELIKLSGSMNRSEL-LYPVVAQLAA 580
           Q +    ++ ++   +E  ++ +  ++++        +   G +  +E  +  V+ +   
Sbjct: 391 QKLEEASLSAQSSTKEEASLRMQEAQLISRFVAKARTVVPKGEVILNESNIDSVLLEDGD 450

Query: 581 QGNSDKGTQVVAISGKVRHPGVYPLSQGAKVKDLVIAAGGLVEGAYTARAELTTTVIGSE 640
             N  + T ++ + G+V  P      +G   +D +   GGL + +  AR      VI   
Sbjct: 451 VINIPEKTSLIMVHGEVLFPNAVSWQKGMTTEDYIEKCGGLTQKSGNAR----IIVIRQN 506

Query: 641 ESSVNHSSVN 650
            ++VN   V+
Sbjct: 507 GAAVNAEDVD 516



 Score = 26.2 bits (56), Expect = 0.006
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 800 QLEDQDILYVPSVKQTIAVMGEVQHAATHRFKEGLTLDQYLEMSGGARERADEDRTYIIK 859
           Q  D D + V   + T +V G+V ++    F+E        E    AR +       I++
Sbjct: 236 QFADGDTIIVGPRQHTFSVQGDVFNSYDFEFRESSI--PVTEALSWARPKPGATHITIMR 293

Query: 860 ANGSVLLPNRSMWFSSNTE----LNPGDTIIVPLD 890
             G   L  RS ++  ++     L  GDT+IV  D
Sbjct: 294 KQG---LQKRSEYYPISSAPGRMLQNGDTLIVSTD 325