Pairwise Alignments

Query, 920 a.a., polysaccharide export protein (RefSeq) from Shewanella loihica PV-4

Subject, 379 a.a., putative O-antigen capsule outer membrane auxillary protein export channel from Escherichia coli BL21

 Score = 79.3 bits (194), Expect = 4e-19
 Identities = 55/206 (26%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 139 EYLVGPGDRIKVQLF---------GKENKEYDLV--INREGSIQFPELGPISVAGLSFAE 187
           EY +G GD + V ++         G+     D    +N +G+I +P +G + VAG +  +
Sbjct: 84  EYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQ 143

Query: 188 LRESLSHRISQQMIGIESNITMGELRSIRIFIAGDAYKPGSYTVSSLS-TITQALFVAGG 246
           +R  ++ R+   +   + ++++   RS + ++ G+  K G   ++++  TI  A+  AGG
Sbjct: 144 VRNEITARLDSVIESPQVDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGG 203

Query: 247 VNEIGSLRNIQVKRNGKLVGSMDLYDLLMRGDASGDIRLRSGDVVFIPPVGGL-VSITGE 305
           +      RN+ + +NG +   ++LY L+ RGD   +  L  GD++FIP    L V + GE
Sbjct: 204 LTADADWRNVVLTQNG-VKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGE 262

Query: 306 VRRPAIYELKRN-ETVADIVAMAAGV 330
           V + +  ++ R+  T+A+ +  A G+
Sbjct: 263 VGKQSTLKMDRSGMTLAEALGNAEGM 288



 Score = 32.0 bits (71), Expect = 7e-05
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 15/158 (9%)

Query: 588 TQVVAISGKVRHPGVYPLSQ-GAKVKDLVIAAGGLVEGAYTARAELTTTVIGSEESSVNH 646
           +Q   ++G+V   G  P++     + D + AAGGL   A      LT   + ++      
Sbjct: 170 SQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQNGVKTK------ 223

Query: 647 SSVNLDDALAGID-SANVVLSSRDILTVMTTPDWQENKAVEIRGEV-KFPGMYNIRRGET 704
             VNL   +   D   N +L   DIL +    D +    V + GEV K   +   R G T
Sbjct: 224 --VNLYALMQRGDLRQNKLLHPGDILFIPRNDDLK----VFVMGEVGKQSTLKMDRSGMT 277

Query: 705 LADVIDRAGGFTQYAYLPSSVFVRESVRQQEQLEIKKL 742
           LA+ +  A G  Q     + +FV  + + ++  +I  +
Sbjct: 278 LAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANI 315



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 8/148 (5%)

Query: 753 RGVSKDGNVVNYSDAKMMLTDLENIKAVGRLVVDLSAISIGIEQADIQLEDQDILYVPSV 812
           R  S  GN VN +D  +    +  +K  G+ +  +         + I+    D+      
Sbjct: 111 RSASDTGNWVN-ADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQVDVSVAAFR 169

Query: 813 KQTIAVMGEVQHAATHRFKE-GLTLDQYLEMSGGARERADEDRTYIIKANGSVLLPNRSM 871
            Q   V GEV  +         LT+   +  +GG    AD  R  ++  NG     N   
Sbjct: 170 SQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADW-RNVVLTQNGVKTKVNLYA 228

Query: 872 WFS-----SNTELNPGDTIIVPLDTEYK 894
                    N  L+PGD + +P + + K
Sbjct: 229 LMQRGDLRQNKLLHPGDILFIPRNDDLK 256