Pairwise Alignments

Query, 175 a.a., NusG antitermination factor (RefSeq) from Shewanella loihica PV-4

Subject, 162 a.a., Transcriptional activator RfaH from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 88.2 bits (217), Expect = 6e-23
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 15/176 (8%)

Query: 1   MKSWYLVYCKPRGETRAQQNLALQQIETYLPTLPQQITKSGKNSVKRLPLFPCYLFIYFD 60
           M+SWYL+YCK     RAQ++L  Q +    P +  +    GK +    PLFP YLF+ FD
Sbjct: 1   MQSWYLLYCKRGQLQRAQEHLERQAVSCLTPMITLEKMVRGKRTSVSEPLFPNYLFVEFD 60

Query: 61  PLEISVSKIHSTRGVSRIIGCREEMTAIDDAIVHSIRMREAKLLNALQLPSDDLLSGNAE 120
           P  I  + I++TRGVS  +        +  +++H + + + +              G  +
Sbjct: 61  PEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPE--------------GVVD 106

Query: 121 PRLSV-GDKVKFVEGPFKELEGIFEEQSGDKRCHILFEIMGQQKRVSVSRVSIKGI 175
           P     GD V   EG F+ L+ IF E  G+ R  +L  ++ ++ + SV     + I
Sbjct: 107 PETPYPGDSVIITEGAFEGLKAIFTEPDGETRSMLLLNLLNKEVKQSVKNTGFRKI 162