Pairwise Alignments

Query, 175 a.a., NusG antitermination factor (RefSeq) from Shewanella loihica PV-4

Subject, 167 a.a., transcriptional activator RfaH from Kangiella aquimarina DSM 16071

 Score = 90.1 bits (222), Expect = 2e-23
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 2   KSWYLVYCKPRGETRAQQNLALQQIETYLPTLPQQITKSGKNSVKRLPLFPCYLFIYFDP 61
           K WYLV+ KPR E RA+++L  Q I   LP +  +    GK  +   PLFP YLF+    
Sbjct: 6   KGWYLVHSKPRQELRAEEHLKNQAINCVLPLIEIEKIIRGKRQLISEPLFPGYLFVELQT 65

Query: 62  LEISVSKIHSTRGVSRIIGCREEMTAIDDAIVHSIRMREAKLLNALQLPSDDLLSGNAEP 121
                SKI STRGV   +        + ++++  +++ E +         D  +  NA  
Sbjct: 66  NGQDWSKIRSTRGVRDFVRFGGVPGRVPESVLEHLKILEIR---------DAAIETNAP- 115

Query: 122 RLSVGDKVKFVEGPFKELEGIFEEQSGDKRCHILFEIMGQQKRVSVSRVSIK 173
               GDKV   +GPFK+LEG+F+  +G++R  +L  I+G+   + +    ++
Sbjct: 116 --KAGDKVVITDGPFKDLEGVFKISNGEERSIVLLTILGKATEMELENNKLR 165