Pairwise Alignments

Query, 855 a.a., DNA mismatch repair protein (RefSeq) from Shewanella loihica PV-4

Subject, 880 a.a., DNA mismatch repair protein MutS from Sphingobium sp. HT1-2

 Score =  535 bits (1378), Expect = e-156
 Identities = 355/885 (40%), Positives = 492/885 (55%), Gaps = 46/885 (5%)

Query: 3   AVDTQYLEKHTPMMRQYLTLKAETPDMLLFYRMGDFYELFYDDAKRASELLGISLTARGK 62
           A  T    + TPMM QY TLKAE  D LLFYRMGDF+ELF+DDAK A+  L I+LT+RG+
Sbjct: 2   ANSTSTTTQPTPMMAQYFTLKAEAQDCLLFYRMGDFFELFFDDAKMAAATLDIALTSRGE 61

Query: 63  SGGDPIPMAGIPYHAVEGYLAKLVQLRVSVAICEQIGDPATTKGP-----VERKIVRIVT 117
             G PIPM G+P H+ E YLA+L++    VAI EQ   PA  K       V R IVR VT
Sbjct: 62  HAGQPIPMCGVPVHSAESYLARLIKGGHRVAIAEQTETPAEAKARGGKALVARAIVRYVT 121

Query: 118 PGTLTDEALLQERQDNLLAAVYH--GKVGFGYATLDVSSGRFVVTELASKEALEAELQRT 175
            GTLT+E LL  R+DN+L A+    G+   G A  D+S+GRF    + + + L AEL R 
Sbjct: 122 AGTLTEETLLDSRRDNMLVALAQTGGEGELGLAAADISTGRFETMTVRAGD-LPAELARL 180

Query: 176 NPAELLYSEDFSEPALIASLSGKRRRPEWEFDYDTSYKLLLEQFGTKDLYGFGLGEVRLS 235
            P+E++ +E  +       ++      +  F    + + L   F    L GFG    R  
Sbjct: 181 RPSEVVIAEGST-----LEVANSHPFDKAAFSSARAEEALKRLFAVATLDGFGQFS-RAE 234

Query: 236 LQAAGCLIQYVKDTQRTALPHINAITRFNQCDSIVLDAATRKNLELTRNLQGGSDNTLAS 295
           L A G LI Y+    +  +P +    R      + +DAATR++LE+     G    +L  
Sbjct: 235 LAAMGGLISYLDHAGKGTMPFLAPPLRKTSGAHVAIDAATRESLEIVATTGGTRAGSLLG 294

Query: 296 VLDNTATPMGSRMLQRWIHEPLRNHNIIRARHDAIDELLDNGYHES-LHEQLKALGDIER 354
            +D T T  G+R+L + +  PL +  +I AR   +    D+    S L   L+AL DI R
Sbjct: 295 AVDRTVTGAGARLLAQDLSAPLMDAPLIDARLGLVQLFHDDATLRSQLRAALRALPDIGR 354

Query: 355 ITARLAIRSARPRDFARLRQALA---LLPEIQQQLAD---CNSPHLKALSSHLGDFPEEH 408
              R+A+    PRD  +LR  L    LL E   +LAD     +  L AL  H G   +  
Sbjct: 355 ALGRVAVGRGSPRDLGQLRDGLGEARLLRERLGRLADQPLLLTQLLPALDGH-GALVDA- 412

Query: 409 ALLSRAIVDNPPMLIRDGGVIKEGYHNELDEWRKLSQGATDYLAELEAREKAATGASTLK 468
             L+RA+V +PP    +GG I +G+   LDE R+L+      +A LEA+ +  TG S LK
Sbjct: 413 --LARALVPSPPTETNNGGYIADGFDPALDELRRLAGDGRRAIAALEAQYREQTGISALK 470

Query: 469 VGYNRVHGYYIEVSRRESD--LVPMS-YQRRQTLKNTERYIVAELKEHEEKVLSSQGKAL 525
           + +N V GY++EV  R +D  + P S +  RQTL    R+   +L E   +V  +   AL
Sbjct: 471 IRHNGVLGYHVEVPARAADQLMQPESGFTHRQTLAGIVRFNSIDLHEQAGRVAQAGAHAL 530

Query: 526 ALEKQLWEELFDLLMPRLHELQAFARAAAELDVITNFAERAEQLDYHRPELTAQSGI--- 582
             E    E L D ++ R  ++   A A A LDV    AERA +  + RP    + G+   
Sbjct: 531 VAEAAHLETLIDAVLDRKADIARAADALARLDVAAALAERAAEGGWQRPLFVVEDGVGPC 590

Query: 583 -HIEAGRHPVVE---RVSQTPFIANPVSLNPARRMLIVTGPNMGGKSTYMRQVALITLMA 638
             I  GRHPVVE   R    PF+AN   L    R+ +VTGPNMGGKST++RQ ALI ++A
Sbjct: 591 LDIVGGRHPVVEDALRAQGQPFVANDCRLVATDRLWLVTGPNMGGKSTFLRQNALIVILA 650

Query: 639 HIGSFVPAQKAAIGPVDRIFTRIGAADDLASGRSTFMVEMTETANILHNATPESLVLMDE 698
             G+FVPA+ A +  VDR+F+R+GA+D+LA GRSTFMVEM ETA IL  AT  S V++DE
Sbjct: 651 QAGAFVPAETATLTLVDRLFSRVGASDNLARGRSTFMVEMVETAAILAQATEHSFVILDE 710

Query: 699 IGRGTSTYDGLSLAWSAAEHLAQNLKSMTLFATHYFELTQLPDQMENVANVHLDAIEHDD 758
           +GRGTSTYDGL+LAW+  E + +  +   LFATH+ ELT+L + ++ ++  H+ A E   
Sbjct: 711 VGRGTSTYDGLALAWAVVEAVHEVNRCRCLFATHHHELTRLSETLDALSLHHVRAREWKG 770

Query: 759 TIAFMHAVQEGAASKSYGLQVAALAGVPAKVVQAAKHKLHHLESRDRE--------EELP 810
            +  +H + EG A +SYGL VA LAG+P  V++ AK  L  LE+   +        ++LP
Sbjct: 771 DLVLLHELAEGPADRSYGLAVARLAGLPPLVLKRAKDVLGRLEAGKAKTGGIAAGLDDLP 830

Query: 811 ELRQAQLSMTMPETSKAL-DRLDTIDPDSLTPRQALDLLYELKQL 854
               A ++    E +  L D LD ID D+L+PR+ALD +Y LKQL
Sbjct: 831 LF--ASVATQAEEVADPLRDALDGIDADALSPREALDHIYRLKQL 873