Pairwise Alignments

Query, 855 a.a., DNA mismatch repair protein (RefSeq) from Shewanella loihica PV-4

Subject, 857 a.a., DNA mismatch repair protein MutS from Pseudomonas putida KT2440

 Score =  939 bits (2428), Expect = 0.0
 Identities = 483/854 (56%), Positives = 619/854 (72%), Gaps = 9/854 (1%)

Query: 9   LEKHTPMMRQYLTLKAETPDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGDPI 68
           L  HTPMM+QY  LK + PD L+FYRMGDFYE+FY+DAK+A++LL I+LTARG+S G  I
Sbjct: 4   LSAHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSI 63

Query: 69  PMAGIPYHAVEGYLAKLVQLRVSVAICEQIGDPATTKGPVERKIVRIVTPGTLTDEALLQ 128
           PM GIP+H++EGYLAKLV+L  SV ICEQIGDPAT+KGPVER++VRI+TPGT++DEALL 
Sbjct: 64  PMCGIPFHSLEGYLAKLVKLGESVVICEQIGDPATSKGPVERQVVRIITPGTVSDEALLD 123

Query: 129 ERQDNLLAAVYHGKVGFGYATLDVSSGRFVVTELASKEALEAELQRTNPAELLYSEDFSE 188
           ER+DNL+AA+   +  FG A LD++SG F V E+   E L AEL+R NP ELL  +D+  
Sbjct: 124 ERRDNLIAALLGDERLFGLAVLDITSGNFSVQEIKGWENLLAELERLNPVELLIPDDWPR 183

Query: 189 PALIASLSGKRRRPEWEFDYDTSYKLLLEQFGTKDLYGFGLGEVRLSLQAAGCLIQYVKD 248
                   G RRR  W+FD D++ K L +QF TKDL GFG  ++ L++ AAGCL+ Y K+
Sbjct: 184 DLPAEKRPGARRRAPWDFDRDSARKALCQQFATKDLKGFGCDKLTLAIGAAGCLLTYAKE 243

Query: 249 TQRTALPHINAITRFNQCDSIVLDAATRKNLELTRNLQGGSDNTLASVLDNTATPMGSRM 308
           TQRTALPH+ ++      D+++LD A+R+NLEL  NL GG DNTL SV+D   T M SR+
Sbjct: 244 TQRTALPHLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQSVIDRCQTAMASRL 303

Query: 309 LQRWIHEPLRNHNIIRARHDAIDELLDNGYHESLHEQLKALGDIERITARLAIRSARPRD 368
           L RW++ PLR+  +++AR D+I  LLD+   E L  QLK +GDIERI AR+ +R+ARPRD
Sbjct: 304 LSRWLNRPLRDLKVLQARQDSIRCLLDSYRFEKLQPQLKEIGDIERILARIGLRNARPRD 363

Query: 369 FARLRQALALLPEIQQQLADCNSPHLKALSSHLGDFPEEHALLSRAIVDNPPMLIRDGGV 428
            ARLR AL  LPE+Q  + +  +PHL  L++  G +PE  +LL RAI+DNPP +IRDGGV
Sbjct: 364 LARLRDALGALPELQNAMTELEAPHLARLAAITGTYPELASLLERAIIDNPPAVIRDGGV 423

Query: 429 IKEGYHNELDEWRKLSQGATDYLAELEAREKAATGASTLKVGYNRVHGYYIEVSRRESDL 488
           +K GY NELDE   +S+ A  +L +LEAREKA TG + LKVGYNRVHGY+IE+  ++++ 
Sbjct: 424 LKAGYDNELDELLAISENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFIELPTKQAEQ 483

Query: 489 VPMSYQRRQTLKNTERYIVAELKEHEEKVLSSQGKALALEKQLWEELFDLLMPRLHELQA 548
            P  Y RRQTLK  ER+I  ELK  E+K LS++ +ALA EK L++ L + L+  L  LQ 
Sbjct: 484 APGDYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYDALLETLISHLAPLQD 543

Query: 549 FARAAAELDVITNFAERAEQLDYHRPELTAQSGIHIEAGRHPVVERVSQTPFIANPVSLN 608
            A A AELDV++N AERA  LD + P    +  + IE GRHPVVE+V  TPF+AN + L+
Sbjct: 544 SAAALAELDVLSNLAERALNLDLNCPRFVDEPCLRIEQGRHPVVEQVLTTPFVANDLGLD 603

Query: 609 PARRMLIVTGPNMGGKSTYMRQVALITLMAHIGSFVPAQKAAIGPVDRIFTRIGAADDLA 668
            + RMLI+TGPNMGGKSTYMRQ ALI L+AHIGSFVPA    +  VDRIFTRIG++DDLA
Sbjct: 604 NSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLA 663

Query: 669 SGRSTFMVEMTETANILHNATPESLVLMDEIGRGTSTYDGLSLAWSAAEHLAQNLKSMTL 728
            GRSTFMVEM+ETANILHNAT  SLVLMDE+GRGTST+DGLSLAW+AAE LAQ L++ TL
Sbjct: 664 GGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDGLSLAWAAAERLAQ-LRAYTL 722

Query: 729 FATHYFELTQLPDQMENVANVHLDAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPAK 788
           FATHYFELT LP+    VANVHL+A EH++ I F+H V  G AS+SYGL VA LAGVP  
Sbjct: 723 FATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPTA 782

Query: 789 VVQAAKHKLHHLESRDREEELPELRQAQLSMTMPETS--------KALDRLDTIDPDSLT 840
           V+Q A+  L  LE+     E P   +A+ +  +P  S         A+++L  +  D +T
Sbjct: 783 VIQRAREHLGRLETTSLPHEQPAAHKAKDAPQVPHQSDLFASLPHPAIEKLGKLQLDDMT 842

Query: 841 PRQALDLLYELKQL 854
           PRQA+++LY+LK L
Sbjct: 843 PRQAIEMLYQLKNL 856