Pairwise Alignments

Query, 553 a.a., recombination and repair protein (RefSeq) from Shewanella loihica PV-4

Subject, 557 a.a., DNA repair protein RecN from Pseudomonas fluorescens SBW25

 Score =  474 bits (1219), Expect = e-138
 Identities = 249/552 (45%), Positives = 350/552 (63%), Gaps = 1/552 (0%)

Query: 1   MLCQLSINNFAIVRFLELDFKSGMTSITGETGAGKSIAIDALGLCLGNRADANTVRPGAS 60
           ML  LS++N+AIV  L+L+   GM+ ITGETGAGKSI +DALGL LG+RAD+  VRPGA 
Sbjct: 1   MLVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDRADSGVVRPGAD 60

Query: 61  KAEVSARFALNDIPLAKRWLEDNDLELDDECILRRTIGSDGRSRAYINGNPVPLNQMRAL 120
           KA++ A F L DIP A+ WL + DL  +  CILRR I ++GRSR YING P PL  ++AL
Sbjct: 61  KADILATFDLADIPEAEAWLAERDLNNEGPCILRRVITAEGRSRGYINGTPCPLGDLKAL 120

Query: 121 GQQLIGIHGQHAHHAMLKSEHQLTLLDSYANHKMLLEACSASYQRFKLIQKELSQLQQSQ 180
           G+ LI IH QH H ++LK++    LLD YA    L      + QR++  ++EL +L  S 
Sbjct: 121 GELLIDIHSQHEHQSLLKTDTHRRLLDEYAGATDLARQVQLAAQRWRQTRQELERLSNSG 180

Query: 181 HERIARKQLLQYQVEELDEFALGEEEFDEIEAEHKKLANGTALIQACQRTLYLLQDNEEG 240
            E+ AR QLL YQ+EEL+   LGE E +++E EHK L N   L+  C++ +    +++ G
Sbjct: 181 DEQRARHQLLSYQLEELESLGLGETELEQLEQEHKNLTNAETLLGICRQVVEQCSESDSG 240

Query: 241 AIESLLNMSLDQAQELEGYDPELKGVGNMLNDALIQVQESSSELQRYLDKLELDPEHFAA 300
            + + L  SL++   +      L     +L  A IQV+E+  EL R+LD  + DP     
Sbjct: 241 NVLNALTASLNRLSSVNNASGSLSEATTLLTSAQIQVEEAVGELNRFLDHFDADPARLQE 300

Query: 301 LEQRLSKIMMLARKHHVNAKDLYQHHQALSQELSELDSDEEKLDEIAQQLESCRESFIAH 360
           +E+RL  I  LARKH +   ++    Q L  E+  L++++E ++ +  +L S    +   
Sbjct: 301 IEERLDTIYTLARKHRIQPTEVATMQQKLLDEIETLNANDESIERLGDELASFARHYQEK 360

Query: 361 AQKLSQSRQRYAKELDKQVTRSIHELSMPKGKFIIDVQFN-PEMMSPNGCDTVEFQVTTN 419
           A++LS  R + A  L   V   I  L MP G+F I++  +    + P G + VE  V+ N
Sbjct: 361 ARELSDLRHQAATGLASAVELEIQRLGMPGGRFTIELHASTSNELQPYGLEQVELLVSAN 420

Query: 420 PGQPLQPIAKVASGGELSRIGLGIQVITAKKVATPTLIFDEVDVGISGPTAAVVGKMLRA 479
           PGQPL+ +AKVASGGELSRI L IQVITA+    PTL+FDEVDVGI GPTA +VG++LR 
Sbjct: 421 PGQPLKALAKVASGGELSRISLAIQVITAQTSRVPTLVFDEVDVGIGGPTAEIVGQLLRR 480

Query: 480 LGESTQVLCVTHLPQVAGNGHQHMFVNKQSKAGQTETSMVPLDKGQRIEELARLLGGDVI 539
           LG+  QVL VTHLPQVA  GHQH+FV+K   +  T T++  L+K +R+EE+AR+LGG  +
Sbjct: 481 LGDRGQVLTVTHLPQVAAQGHQHLFVHKVRGSDATHTAVSKLNKSERVEEVARMLGGIDL 540

Query: 540 TNNTLANAKELL 551
           T  +LA+AK+++
Sbjct: 541 TKESLAHAKKMV 552