Pairwise Alignments

Query, 140 a.a., transmembrane pair domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 145 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score = 96.3 bits (238), Expect = 2e-25
 Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 2/128 (1%)

Query: 2   STTERILHSVLFEIFALALVVPIAIWFTGHGVGEMAAVGIGLSLYTVTWNYFYNLGFDNY 61
           S  +RI H++ FEI  L LV+P+     G  + ++  VG+  +     WNY YNLGFD+ 
Sbjct: 3   SLQDRIRHALSFEIIGLMLVIPLGALLFGMPMEDIGIVGLVSATLATVWNYVYNLGFDHA 62

Query: 62  FG--EDRTKRSLKLRVVHALGFEGGLVFVTVPVVAWFLGITIWQSLMLEAVFLVVFFFYA 119
               +  T ++  +RV HA+ FE GL+ V +P +AW+L I++  +L+++  F + +  YA
Sbjct: 63  MQRLKGTTLKTPAIRVAHAVLFELGLLIVLMPFIAWYLNISLVHALVMDISFALFYVVYA 122

Query: 120 IIFNWLFD 127
            +FNW +D
Sbjct: 123 FVFNWSYD 130



 Score = 38.1 bits (87), Expect = 5e-08
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 6   RILHSVLFEIFALALVVPIAIWFTGHGVGEMAAVGIGLSLYTVTWNYFYNLGFDNYF 62
           R+ H+VLFE+  L +++P   W+    +     + I  +L+ V + + +N  +D  F
Sbjct: 77  RVAHAVLFELGLLIVLMPFIAWYLNISLVHALVMDISFALFYVVYAFVFNWSYDRIF 133



 Score = 28.5 bits (62), Expect = 4e-05
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query: 69  RSLKLRVVHALGFEGGLVFVTVPVVAWFLGITIWQSLMLEAVFLVVFFFYAIIFNWLFDW 128
           RSL+ R+ HAL FE   + + +P+ A   G+ +    ++  V   +   +  ++N  FD 
Sbjct: 2   RSLQDRIRHALSFEIIGLMLVIPLGALLFGMPMEDIGIVGLVSATLATVWNYVYNLGFDH 61

Query: 129 ARSKFYGQRAK 139
           A  +  G   K
Sbjct: 62  AMQRLKGTTLK 72