Pairwise Alignments

Query, 601 a.a., DNA primase (RefSeq) from Shewanella loihica PV-4

Subject, 666 a.a., DNA primase (EC 2.7.7.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  360 bits (923), Expect = e-103
 Identities = 200/440 (45%), Positives = 270/440 (61%), Gaps = 25/440 (5%)

Query: 27  MAIPREFINELVARTDIVDLIDAKVPLKKAGKNHSACCPFHSEKSPSFTVSRDKQFYHCF 86
           +AIP+ FI EL+ R D+VD++   V LKK G N    CPFH EKSPSF+VS  KQFYHCF
Sbjct: 1   VAIPQTFIQELLNRVDVVDVVGRYVQLKKGGANLMGLCPFHGEKSPSFSVSPTKQFYHCF 60

Query: 87  GCGAHGNAIDFVMEYDRLDFVDAIEELAGRLGLEVPREQGTGKRRDEGLSR-----DLYQ 141
           GCGA+GNAI F+ME+  + F++A+++LA + G+++P +  + + R+    +      L  
Sbjct: 61  GCGANGNAIGFLMEHAGMSFIEAVKDLAQQAGMQIPEDDASPQDRERAAQQRQKQATLND 120

Query: 142 LMEEASRYFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYRQNQD 201
           ++E+A+  +  QLK      + +DYL  RGLS ++ + F +G+AP+GW  L   +   Q+
Sbjct: 121 VLEKAAHAYAKQLKT---SPRAIDYLKGRGLSGQIAKTFGLGYAPEGWRALASVFPDYQE 177

Query: 202 AQDKLLTAGMVIENDS-------GKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKY 254
               L+ +GMVIE++         KRYDRFRDR+MFPIR+ +G  IGFGGRVL  G PKY
Sbjct: 178 PL--LVESGMVIEHEDEKGADGQAKRYDRFRDRIMFPIRNVKGEHIGFGGRVLDKGEPKY 235

Query: 255 LNSPETPIFHKGYELYGLYELKQRHRDPSQILIVEGYMDVVALTQFGVDYAVASLGTSTT 314
           LNSPETP+F KG ELYGL+E +   R     L+ EGYMDVVAL Q G   AVA+LGT+ T
Sbjct: 236 LNSPETPVFSKGRELYGLFEARTAIRVAGYALVTEGYMDVVALAQLGFANAVATLGTACT 295

Query: 315 ADQFQLLLRSAKEVICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGEDPDSLV 374
            D  Q LLR    V+  +DGD AG  AA +AL+ ALPL      VKF+FLP   DPDS +
Sbjct: 296 PDHVQKLLRFTDSVVFSFDGDGAGRRAARKALDAALPLATDTRSVKFLFLPAEHDPDSFI 355

Query: 375 RQIGKPAFEQLIAEAKLLPEFLFDT------LASRYGTDKGTLAKQAMSLIEKVQDTVLQ 428
           R  G+ AF Q + EA  L  FL ++      L S  G  +  +A QA  L   + D  L+
Sbjct: 356 RANGEAAFAQCVKEAVPLSRFLLESAGADCDLTSAEG--RARMASQARPLWSALPDGALK 413

Query: 429 SLLLENLAYKLGMNSAEELQ 448
             LL  LA  +G+ S + LQ
Sbjct: 414 RQLLGELATGIGIGSPDLLQ 433