Pairwise Alignments

Query, 601 a.a., DNA primase (RefSeq) from Shewanella loihica PV-4

Subject, 584 a.a., DNA primase from Dickeya dianthicola ME23

 Score =  549 bits (1414), Expect = e-160
 Identities = 292/560 (52%), Positives = 382/560 (68%), Gaps = 12/560 (2%)

Query: 29  IPREFINELVARTDIVDLIDAKVPLKKAGKNHSACCPFHSEKSPSFTVSRDKQFYHCFGC 88
           IPR FIN+L+ARTDI+DLIDA+V LKK GKN+ ACCPFH EK+PSFTV+ DKQFYHCFGC
Sbjct: 5   IPRVFINDLLARTDIIDLIDARVKLKKQGKNYHACCPFHHEKTPSFTVNGDKQFYHCFGC 64

Query: 89  GAHGNAIDFVMEYDRLDFVDAIEELAGRLGLEVPREQGTGKRRDEGLSR-DLYQLMEEAS 147
           GAHGNAIDF+M YDRL+FV++IEELA    L+VP E GTG  + E   R  LY+LME+ S
Sbjct: 65  GAHGNAIDFLMNYDRLEFVESIEELAAMHSLDVPYEAGTGPTQLERHQRQSLYELMEQLS 124

Query: 148 RYFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYRQNQDAQDKLL 207
            ++Q  L Q        +YL+ RGLSDEVI  F IG  P GWD  L R+ ++ + +  L 
Sbjct: 125 AFYQHTLNQPAG-TPAREYLSRRGLSDEVIRQFAIGCTPPGWDNALKRFGRSSENRTTLT 183

Query: 208 TAGMVIENDSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPETPIFHKGY 267
            AGM++ N++G+ YDRFRDR+MFPIRD+RGRVI FGGRV+G+G PKYLNSPET IFHKG 
Sbjct: 184 DAGMLVTNENGRTYDRFRDRVMFPIRDKRGRVIAFGGRVMGEGMPKYLNSPETEIFHKGR 243

Query: 268 ELYGLYELKQRHRDPSQILIVEGYMDVVALTQFGVDYAVASLGTSTTADQFQLLLRSAKE 327
           +LYGLYE +Q++ +  ++L+VEGYMDVVAL QFG+DYAVASLGTSTTAD  QLL R+  +
Sbjct: 244 QLYGLYEAQQKNPELKRLLVVEGYMDVVALAQFGIDYAVASLGTSTTADHIQLLFRATDQ 303

Query: 328 VICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGEDPDSLVRQIGKPAFEQLIA 387
           V+CCYDGD+AG +AAWRALETALP L  G Q++FMFLP GEDPD+LVRQ GK AFEQ I 
Sbjct: 304 VVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDPDTLVRQEGKAAFEQRIE 363

Query: 388 EAKLLPEFLFDTLASRYGTD----KGTLAKQAMSLIEKVQDTVLQSLLLENLAYKLGMNS 443
           +A  L  FLFD+L  +        +  L+  A+ LI +V    L+  L + L  KLG+  
Sbjct: 364 QAMPLSAFLFDSLLQQVDMSTPDGRTKLSTLALPLIGQVPGETLRLYLRQQLGNKLGLLD 423

Query: 444 AEELQRKLGFKRIDANKPLQNKALKGRGTPLRLAIALLVQHPHLGNNLP--VQPALKHIK 501
             +L R L  K  +     Q   LK   T +R+ I LLVQ+P L   +P      ++  K
Sbjct: 424 DSQLDRLLP-KAAEQTSSYQPPRLK--VTTMRILIGLLVQNPRLSFEVPELALDGVEENK 480

Query: 502 MAGIDL-LSLLLDRTRAEKVNSAQLLEQFRGDDQLDTLKKLAQWEHQVADENLQQEFKKA 560
           +AG++L L L+     +  +N   LLE++R       L+ LA W+H + +E L+++F+ +
Sbjct: 481 VAGLELFLDLVKTCNESPGMNMGLLLEKYRESKYRKQLETLAAWDHMIEEEELEEKFRVS 540

Query: 561 LIWLNNQYIEQRYQELSLKQ 580
           L  L +Q ++ R   L  ++
Sbjct: 541 LTELYDQLLQLRMDTLIARE 560