Pairwise Alignments

Query, 601 a.a., DNA primase (RefSeq) from Shewanella loihica PV-4

Subject, 581 a.a., DNA primase from Escherichia coli BL21

 Score =  543 bits (1399), Expect = e-159
 Identities = 290/572 (50%), Positives = 389/572 (68%), Gaps = 15/572 (2%)

Query: 29  IPREFINELVARTDIVDLIDAKVPLKKAGKNHSACCPFHSEKSPSFTVSRDKQFYHCFGC 88
           IPR FIN+L+ARTDIVDLIDA+V LKK GKN  ACCPFH+EK+PSFTV+ +KQFYHCFGC
Sbjct: 5   IPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGC 64

Query: 89  GAHGNAIDFVMEYDRLDFVDAIEELAGRLGLEVPREQGTGKRRDEGLSRD-LYQLMEEAS 147
           GAHGNAIDF+M YD+L+FV+ +EELA    LEVP E G+G  + E   R  LYQLM+  +
Sbjct: 65  GAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQLMDGLN 124

Query: 148 RYFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYRQNQDAQDKLL 207
            ++Q  L+Q         YL  RGLS EVI  F IGFAP GWD +L R+  N + +  L+
Sbjct: 125 TFYQQSLQQPV-ATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLI 183

Query: 208 TAGMVIENDSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPETPIFHKGY 267
            AGM++ ND G+ YDRFR+R+MFPIRD+RGRVIGFGGRVLG+ TPKYLNSPET IFHKG 
Sbjct: 184 DAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGR 243

Query: 268 ELYGLYELKQRHRDPSQILIVEGYMDVVALTQFGVDYAVASLGTSTTADQFQLLLRSAKE 327
           +LYGLYE +Q + +P+++L+VEGYMDVVAL Q+G++YAVASLGTSTTAD  QLL R+   
Sbjct: 244 QLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNN 303

Query: 328 VICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGEDPDSLVRQIGKPAFEQLIA 387
           VICCYDGD+AG +AAWRALETALP +  G Q++FMFLP GEDPD+LVR+ GK AFE  + 
Sbjct: 304 VICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARME 363

Query: 388 EAKLLPEFLFDTLASRYGTD----KGTLAKQAMSLIEKVQDTVLQSLLLENLAYKLGMNS 443
           +A  L  FLF++L  +        +  L+  A+ LI +V    L+  L + L  KLG+  
Sbjct: 364 QAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILD 423

Query: 444 AEELQRKLGFKRIDANKPLQNKALKGRGTPLRLAIALLVQHPHLGNNLPVQPALKHIKMA 503
             +L+R +      A   +     + + T +R+ I LLVQ+P L   +P    L   K+ 
Sbjct: 424 DSQLERLMPKA---AESGVSRPVPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLP 480

Query: 504 GIDLLSLLLDRTRAEK-VNSAQLLEQFRGDDQLDTLKKLAQWEHQVADENL-QQEFKKAL 561
           G+ L   L++   ++  + + QLLE +RG +   TL+KL+ W+  +AD+N+ +Q F  +L
Sbjct: 481 GLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWD-DIADKNIAEQTFTDSL 539

Query: 562 IWLNNQYIEQRYQELSLKQHH---TKEERMQL 590
             + +  +E R +EL  ++     + EER++L
Sbjct: 540 NHMFDSLLELRQEELIARERTHGLSNEERLEL 571