Pairwise Alignments

Query, 816 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  359 bits (921), Expect = e-103
 Identities = 224/630 (35%), Positives = 351/630 (55%), Gaps = 37/630 (5%)

Query: 199  LARIASNKPKHQFEVALEDTPG-KIDYAQAHLTIRKQDGHVAGMLLTLTDITSIKRAKSQ 257
            +A++ S  P   F        G KI      + +   D    G+L    DI+  +RA+  
Sbjct: 655  MAQLCSQLPTQLFLFDCLRADGRKIPIELRLVLVWDDDQRFEGVLGVGRDISQQRRAEKD 714

Query: 258  LDTENRRLKIMLNAIGDAVIATDSEAMITFMNPIAERLTGWVCRDAIGLHIEQVMDLCDA 317
            L    R    +      A++ TD    I   N    R++G+         + +V+D    
Sbjct: 715  L----RMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYA--------VSEVLD---- 758

Query: 318  KTKYRSPNPVTIAIKEK---RNVAMALNCQ--------LNSLDGTTFQIEDSAAPITDSE 366
                + P  +T+  +++   R V   L+ +        L   DG  +        + D E
Sbjct: 759  ----QLPGMLTVDEQQEGHLRYVVKQLHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDE 814

Query: 367  GKVTGGIIVFHDCSESVAMSLKMSHLANHDQLTDLPNRILLHDRINHACAVADSYDKSVA 426
            G +   +  F D SE  A   ++  LA +D LT LPNR L  DR+ +A   A+     V 
Sbjct: 815  GDLASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVV 874

Query: 427  LMLIDIDHFKYLNDSLGHSYGDQVIKQVAKRLQSLIDPNATLGRIGGDEFVLLL-PSLT- 484
            LM +D+D FK +NDSLGH+ GD+++K +A RL + +D + T+ R+GGDEF LLL P  T 
Sbjct: 875  LMFLDLDRFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTR 934

Query: 485  --ATSQVDSIATDIVRSLNTPFRIDGQEYTLSVSVGISIYPSDALRAEELMTHVDAAMYR 542
              A ++   +A +I+ SL  PF ++ +E+ ++ S+GI++ P D     +LM + D AMY 
Sbjct: 935  EMALNRAIHVAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYH 994

Query: 543  AKDLGRNRFCYFSEDLEQELTKRHELVTLLRTAIDTEAIEVYYQPKVDLKTKEIIGAEAL 602
            AK+ G+N F ++  ++     +R EL + LR A++     +YYQP+     K + GAEAL
Sbjct: 995  AKERGKNNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEAL 1054

Query: 603  ARLYDPSGKLISPLDFIPLAEETGLIHQLGEIILKQSCMAAKAWQK-RGRPLQIAVNIAA 661
             R   P+  L+ P DFIP+ EE GL+  +G+ +L+++    KAW K + R  +++VNI+A
Sbjct: 1055 LRWRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKVSVNISA 1114

Query: 662  KQFTNPEFCDSVAKVLELTGLDSSFLELEVTESSLMYDFDEALNVLNTLSSLGLSIAIDD 721
            +QF++ +    +A +LE +GL  + LELE+TES LM + +EAL +L +L +LGLSIA+DD
Sbjct: 1115 RQFSDGQLGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDD 1174

Query: 722  FGTGYSSLSYLKFFPVNTLKIDQSFVKDMLGDEQSLDIVKAVIHLAKSLKLKLIAEGIED 781
            FGTGYSSL+YLK FP++ LKID++FV  +   EQ   I +A+I +A SL L +IAEG+E 
Sbjct: 1175 FGTGYSSLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVET 1234

Query: 782  AEQLQKLVALECEQGQGYMFSKPLPLKEFD 811
             EQL+ L    C++ QGY+F +P+P  +F+
Sbjct: 1235 HEQLEFLREHGCDEVQGYLFGRPMPAHQFE 1264



 Score = 32.7 bits (73), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 34/67 (50%)

Query: 232 RKQDGHVAGMLLTLTDITSIKRAKSQLDTENRRLKIMLNAIGDAVIATDSEAMITFMNPI 291
           R  +G V  ++    D+T    A   L    +R +++  +I D + +TD++  + +++P 
Sbjct: 549 RNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPS 608

Query: 292 AERLTGW 298
            + + G+
Sbjct: 609 VQSVLGY 615