Pairwise Alignments

Query, 337 a.a., transposase IS116/IS110/IS902 family protein (RefSeq) from Shewanella loihica PV-4

Subject, 352 a.a., transposase from Pseudomonas putida KT2440

 Score =  208 bits (529), Expect = 2e-58
 Identities = 127/339 (37%), Positives = 190/339 (56%), Gaps = 11/339 (3%)

Query: 4   TLIGIDLAKNVLQVCGVNQVGKTLFNRTVKRTQLLKT-LVQYPDAV-IAMEACSGSNYWG 61
           T I +DLAK V Q+ G +  G+ ++   +K  Q     L++ P  V + ME   G+  W 
Sbjct: 5   TTICVDLAKQVFQLAGEDATGRVIYEDRIKSRQAFHDFLLRLPTTVAVLMECGPGAQAWA 64

Query: 62  RELLSRGFEVKLIPPQHVKPFVKGNKNDRNDAFAICEAAMRPNIIFVKPRTLAQVDIIIS 121
           R L ++G  V+++P Q V     G KNDRND +AI  A    +I  +  ++   + I   
Sbjct: 65  RLLQAKGNPVRILPAQRVAEHRSGAKNDRNDCYAILRAGRDTSIASIPIKSTTALAIQAL 124

Query: 122 HRIRERRIRVRTALTNQIRGLLSEYGIVIPKGRDPLNLALPELLEDADNSLTTTARRYIR 181
           HRIR   I+  TAL NQIRGLL E+G+ +P+G   +N  +P+ LEDA   L    R  + 
Sbjct: 125 HRIRRGNIKRHTALGNQIRGLLLEHGVSMPQGDAAINKHVPQALEDASLPLPDLLRELLD 184

Query: 182 ELLDELYAINASIKALEKEIRLQARNHEDTKRLTAIRGVAEIIATASVSFAGDGSGYQNG 241
           ELL +  ++   I AL + +   A+  +  +RL  IRGV  IIATA V+   D S + +G
Sbjct: 185 ELLMDWLSLGERITALSRRLEATAQEDKVAQRLITIRGVGPIIATAIVAKQTDPSRFASG 244

Query: 242 RHFSANLGLVPKEFSSGGKQKLGAITKRGNSYLRRQLIQGAWSVIRYAKNNDD-----RL 296
           R +SA  G+VP + SSG K +LG ++KRG+ Y+R  +IQGA SV+   + + D     RL
Sbjct: 245 RMYSAFFGIVPDQHSSGNKIRLGKMSKRGDGYIRSLMIQGAHSVLSQLRPDSDQPDDRRL 304

Query: 297 SVWARKVIERRGKQKAAVAVANKLARIIWAMLYYKTEYR 335
             W    + R G+++AA+ +AN+  RIIWA+L     Y+
Sbjct: 305 LRW----LSRLGRKEAAIRLANRNLRIIWALLQSDQVYQ 339