Pairwise Alignments

Query, 837 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  370 bits (950), Expect = e-106
 Identities = 236/666 (35%), Positives = 357/666 (53%), Gaps = 21/666 (3%)

Query: 185  GRYVLINHSVEIAWGRSKEQLLNRTDDEIF----SPELAEEFVQGDYESIVRGVQVTAAE 240
            G+++ IN +    +G S  Q+L RT +EI     S E A+   Q   E  +  V V    
Sbjct: 433  GQFIEINPAFTQTFGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNH 492

Query: 241  CEAKDIDQSNSWLETTKVPVVSPDGTLEGVIGISRNITSHKAAQEQLELAANIFENSVEG 300
               ++ D     + +  + V     ++  +  I++   +  A +   E  A  F +S + 
Sbjct: 493  ---RNGDPLTCVISSRLITVDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDA 549

Query: 301  VVITDA-SGNIIEVHGAFTEITGYSRDEVLGENPRILNSGRHDKAFFERLWRSLLTNGK- 358
            + IT+  SG  +EV+  F  +TGYS DEV+G     +     DK     L   L   G+ 
Sbjct: 550  ITITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQR-SALLAELRERGRV 608

Query: 359  WHGEIWNRRKSGAIYPEQLTISSMYGDDHQVRYFVAVFADISAQKQSEKELARLVYHDPL 418
             H E+  R K G I   ++++  +    ++V   +    D+S  K ++ ++  L YHDPL
Sbjct: 609  HHREMLGRNKRGDILTVEVSVEPI--TLNEVDCLLLTARDVSQLKNAQAQIRHLAYHDPL 666

Query: 419  TKLPNRMMLSANLEQELRHAAREETELALIFIDVDLFKHINDSYGHVTGDAILVEVARRL 478
            T LPNR +L   L Q++    R     AL+F+D+D FKHINDS GH  GD +L  +  RL
Sbjct: 667  TNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARL 726

Query: 479  GQKLGEEATLARLGSDEFIAVLPHVES-----DDSVSLMVSRLREAFDAPFLLDDEGSVR 533
               +  E T+ARLG DEF+ +L  +E      ++ V  +   LRE    P  LD +  ++
Sbjct: 727  EASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELLAEPMSLDGQ-RLQ 785

Query: 534  LTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGRNNYAFYTQSLTLASVEHLKLQSAL 593
            +T S+GVA+ P  G +   LL+ AD A++RAK +GRN    +  ++  A+ E L++++ L
Sbjct: 786  VTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDL 845

Query: 594  HDAINKDAFYLVYQPKLALGTGQCVGFEALLRWEDPQLGTISPAIFIPVAENIGLINEIG 653
              A+ +    L +QP++     + VG E LLRW  PQLG   P+ FI V E  GLI E+G
Sbjct: 846  RLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVG 905

Query: 654  LWVLKQAATQGAQWLAEGKRFG---RISVNVAGPQLQQKQFCAQVKRVLDEAGLPPEYLE 710
             W+L +A    A+ L +G        + VN++  Q +Q  F  +V R LD+  LP + L 
Sbjct: 906  SWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLT 965

Query: 711  LEVTESCMMSDPLAVIEVLKQLGELGVELSVDDFGTGYSSLNYLKRLPIHKLKIDQSFIR 770
            LE+TE  ++ +    I  + +L   GV  ++DDFGTGYSSL YLKRLP+  LKIDQSF+R
Sbjct: 966  LEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVR 1025

Query: 771  DIPRDGNNTAIAKAVIALGHALNLCIIAEGVETPEQAAFLEAAGCDQAQGYLYSKPRMVE 830
            D P D N+  I +A++A+  +L+L +IAEGVE  EQ AFLE  GC   QGYL+S+P  + 
Sbjct: 1026 DAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLP 1085

Query: 831  ELAEFL 836
            E  + L
Sbjct: 1086 EFRQML 1091



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 272 GISRNITSHKAAQEQL----ELAANIFENSVEGVVIT-DASGNIIEVHGAFTEITGYSRD 326
           G   +IT     +++L    E  A++F+ S + + +T   +G  IE++ AFT+  G+S  
Sbjct: 392 GTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSSA 451

Query: 327 EVLG 330
           +VLG
Sbjct: 452 QVLG 455