Pairwise Alignments

Query, 837 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  444 bits (1143), Expect = e-128
 Identities = 227/578 (39%), Positives = 355/578 (61%), Gaps = 5/578 (0%)

Query: 253  LETTKVPVVSPDGTLEGVIGISRNITSHKAAQEQLELAANIFENSVEGVVITDASGNIIE 312
            +E   V V   D   EGV+G+ R+I+  + A++ L +AA +FE+S   ++ITD +G I++
Sbjct: 681  IELRLVLVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQ 740

Query: 313  VHGAFTEITGYSRDEVLGENPRILNSGRHDKAFFERLWRSLLTNGKWHGEIWNRRKSGAI 372
             + AF+ ++GY+  EVL + P +L      +     + + L   G W GE+W +R+ G  
Sbjct: 741  ANEAFSRVSGYAVSEVLDQLPGMLTVDEQQEGHLRYVVKQLHQRGSWEGEVWLKRRDGDH 800

Query: 373  YPEQLTISSMYGDDHQVRYFVAVFADISAQKQSEKELARLVYHDPLTKLPNRMMLSANLE 432
            YP  + I+++  D+  +  +V  F DIS +K SE+ + RL Y+D LT LPNR +    L 
Sbjct: 801  YPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLY 860

Query: 433  QELRHAAREETELALIFIDVDLFKHINDSYGHVTGDAILVEVARRLGQKLGEEATLARLG 492
              L+ A R++  + L+F+D+D FK INDS GH  GD +L ++A RL   + ++ T+AR+G
Sbjct: 861  NALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMG 920

Query: 493  SDEFIAVL-PHVESDDSVSLMV---SRLREAFDAPFLLDDEGSVRLTASMGVAIYPGDGE 548
             DEF  +L P    + +++  +     +  +   PF+L++     +TAS+G+A+ P DG 
Sbjct: 921  GDEFTLLLQPRPTREMALNRAIHVAENILGSLVRPFVLENR-EFFVTASIGIALSPQDGS 979

Query: 549  SGDTLLRNADTAMHRAKANGRNNYAFYTQSLTLASVEHLKLQSALHDAINKDAFYLVYQP 608
                L++NADTAM+ AK  G+NN+ FY   +  +++E L+L+S L  A+ ++ F L YQP
Sbjct: 980  ELSQLMKNADTAMYHAKERGKNNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQP 1039

Query: 609  KLALGTGQCVGFEALLRWEDPQLGTISPAIFIPVAENIGLINEIGLWVLKQAATQGAQWL 668
            + +    +  G EALLRW  P  G + P  FIPV E +GL+ ++G WVL++A+ Q   W 
Sbjct: 1040 QFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWH 1099

Query: 669  AEGKRFGRISVNVAGPQLQQKQFCAQVKRVLDEAGLPPEYLELEVTESCMMSDPLAVIEV 728
                R  ++SVN++  Q    Q   ++  +L+E+GLPP  LELE+TES +M +    +++
Sbjct: 1100 KAKVRVPKVSVNISARQFSDGQLGTRIANILEESGLPPACLELELTESILMREVNEALQI 1159

Query: 729  LKQLGELGVELSVDDFGTGYSSLNYLKRLPIHKLKIDQSFIRDIPRDGNNTAIAKAVIAL 788
            L  L  LG+ ++VDDFGTGYSSLNYLK+ PI  LKID++F+  +P    +  IA+A+IA+
Sbjct: 1160 LASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAM 1219

Query: 789  GHALNLCIIAEGVETPEQAAFLEAAGCDQAQGYLYSKP 826
             H+LNL +IAEGVET EQ  FL   GCD+ QGYL+ +P
Sbjct: 1220 AHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRP 1257



 Score = 29.3 bits (64), Expect = 0.002
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 24/167 (14%)

Query: 264 DGTLEGVIGISRNITSHKAAQEQL---ELAANIFENSVEGVVI-TDASGNIIEVHGAFTE 319
           +G +  +IG+ +++T    A + L   E    +   S+  V+  TD    +  V  +   
Sbjct: 552 EGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSVQS 611

Query: 320 ITGYSRDEVLGE-------NPRIL----------NSGRHDKAFFERLWRSLLTNGKWHGE 362
           + GY  D +          NP  L          +    D A   +L   L T       
Sbjct: 612 VLGYQADWIFANGWQSIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDC 671

Query: 363 IWNRRKSGAIYPEQLTISSMYGDDHQVRYFVAVFADISAQKQSEKEL 409
           +   R  G   P +L +  ++ DD +    + V  DIS Q+++EK+L
Sbjct: 672 L---RADGRKIPIELRLVLVWDDDQRFEGVLGVGRDISQQRRAEKDL 715