Pairwise Alignments

Query, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella loihica PV-4

Subject, 576 a.a., single-stranded-DNA-specific exonuclease RecJ from Dickeya dadantii 3937

 Score =  658 bits (1697), Expect = 0.0
 Identities = 326/569 (57%), Positives = 423/569 (74%), Gaps = 1/569 (0%)

Query: 6   VRRPKVDDSHLPSHLSPILKQVYASRGCT-VDDCELALANLLRPNTLKDVDKAAAIIADA 64
           +RR    ++ LP  L  +L+++YA RG   + + E +L  LL    L  + +A  ++  A
Sbjct: 7   LRRRPTAETELPDSLPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQAVEVLRQA 66

Query: 65  MAKQQSILIIGDFDADGATSTSVCLLALRMMGAINVDYLIPNRFDYGYGLSPEIVQVAQQ 124
           +A  + I+I+GDFDADGATST++ +LALR MG   V YL+PNRF+ GYGLSPE+V  A  
Sbjct: 67  LADNRRIVIVGDFDADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAA 126

Query: 125 KGAELLITVDNGISSIEGVAAAKALGMQVVITDHHLPGNSVPEADAIVNPNQLGCGFASK 184
           KGAEL++TVDNGISS  GV  A   G+ VV+TDHHLPG ++P A+A++NPN   C F SK
Sbjct: 127 KGAELIVTVDNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSK 186

Query: 185 AIAGVGVAFYLMSALRAELRSRGWYQAQGIQEPNLATLLDIVALGTVADVVSLDTNNRIL 244
           A+AGVGVAFYLM ALRA LR  GW+  +G+ EPNLA LLD+VALGTVADVV LD NNRIL
Sbjct: 187 ALAGVGVAFYLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRIL 246

Query: 245 VDAGLKRVRAGRCRPGITALLEVAKRNTSRIVASDFGFAVGPRLNAAGRLDEMALGVETL 304
           +  GL R+RAG+CRPGI ALLEV+ R+ +++VASD GFA+GPRLNAAGRLD+M++GVE L
Sbjct: 247 ISQGLSRIRAGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELL 306

Query: 305 LCDDMMRARRMASELDGLNAERRELETGMQQEALKSLESLSLNEAELPWGIALYQQDWHQ 364
           LC+D+++AR +AS+LD LN  RRE+E GMQ EAL   E L  +   LP G+A+Y   WHQ
Sbjct: 307 LCNDIVQARMLASDLDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYHPQWHQ 366

Query: 365 GVIGILASRIKDKYHRPVIAFAEAGEGEIKGSARSIKGLHMRDLLELINARHPGMIIKFG 424
           GV+GILASRIK+++HRPVIAFA AG+G +KGS RSI GLH+RD LE ++  HPG+++KFG
Sbjct: 367 GVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFG 426

Query: 425 GHAMAAGLSLRAGEFERFAKAYDEAVRELLAPEQLTGEIVSDGELSPAQLNMALARELRS 484
           GHAMAAGLSL    F+ F + + + V E L   QL G + SDGEL+  +L +  A  LR 
Sbjct: 427 GHAMAAGLSLVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPELTLGTAEMLRE 486

Query: 485 AGPWGQNFPEPIFDGVFRILQQRIVGERHLKLVLESECGQTMVDAIAFNVDLTTWPDATI 544
           AGPWGQ FPEP FDG FR+LQQR+VGERHLK+++E   G  ++D IAFNVD   WPD+++
Sbjct: 487 AGPWGQAFPEPTFDGRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTLLWPDSSV 546

Query: 545 QYAEVAYKLDINEFRGNESLQLMVEQIEP 573
           +  E+AYKLD+NEFRG  S+QL++E + P
Sbjct: 547 REVELAYKLDVNEFRGKRSVQLLIEHLWP 575