Pairwise Alignments

Query, 407 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

Subject, 415 a.a., multidrug efflux RND transporter subunit MdtA from Escherichia coli ECRC100

 Score = 97.8 bits (242), Expect = 5e-25
 Identities = 90/361 (24%), Positives = 159/361 (44%), Gaps = 27/361 (7%)

Query: 44  PVPIVDVMPVRSETVSLNLPSYGVVLPKNKTQLVTEVQGRMLTISDKFVAGGIVKRGDML 103
           P+  V       + V   L   G +   N   + + V G+++ +   F  G  VK GD+L
Sbjct: 58  PLAPVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLMALH--FQEGQQVKAGDLL 115

Query: 104 AQIEPSDYEADLMQAQATLAQAKAALDEEIARGEVAKEDWKGYDGGVP-PELGLRVPQLK 162
           A+I+PS ++  L QAQ  LA+ KA L    AR ++A+         V   EL  +   + 
Sbjct: 116 AEIDPSQFKVALAQAQGQLAKDKATLTN--ARRDLARYQQLAKTNLVSRQELDAQQALVS 173

Query: 163 KEQANVKFAEAALARAQRNLERTTIRAPFDGIIKSRNVDLGQYVTLGTNLGELYDTRIAE 222
           + +  +K  EA++A AQ  L+ + I AP DG +  + VD+G  ++ G   G +  T+   
Sbjct: 174 ETEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQ--- 230

Query: 223 IRLPLANHELAYLESIDNPDTQVTLSAELAGRTV-----NWTGKIVRSEG-VIDADNRMV 276
                  H +  L ++   D    + A+ AG+ +     + T     SEG ++  DN++ 
Sbjct: 231 ------THPIDLLFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQID 284

Query: 277 YLVAEVKDPYLRQNKTEGQLPLKYGSFVNAIIKGRTVEGIVKLPRYIVR----DHQVAVV 332
                +K      N+ +   P     FVNA +   T +  V +P   ++     H V V+
Sbjct: 285 ATTGTIKVKARFNNQDDALFP---NQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVL 341

Query: 333 RDDNTLEMREVNVVRSDIDKVYIKDSLKDGERISLTTINNMATGQLVKVIGEEDKSQSQD 392
             +N +    V     D  KV I+  +  G+R+    I+ +  G  V+V+  +  +  ++
Sbjct: 342 NSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVEAQSATTPEE 401

Query: 393 K 393
           K
Sbjct: 402 K 402