Pairwise Alignments

Query, 436 a.a., type II and III secretion system protein (RefSeq) from Shewanella loihica PV-4

Subject, 407 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Pseudomonas fluorescens GW456-L13

 Score =  131 bits (329), Expect = 4e-35
 Identities = 118/416 (28%), Positives = 184/416 (44%), Gaps = 76/416 (18%)

Query: 6   IIAFFWICLLL------PASSMAHNNRPMKLYVGAV---ELYKAANVERIVVGNGKVLSA 56
           I   FW+ L +      PA+    +N P    VG     EL     V ++ VG+ K+   
Sbjct: 13  IHGLFWMGLSVDAAQAAPANCSQLDNWPTTYEVGQGLQNELRSPVPVTQLAVGDPKIADV 72

Query: 57  KVVDNKGVLLIGEAPGNTDLQLWQKDGKLIKLSLTVTPDNSLRTTTMVKKMLAAFPSLTV 116
           +   +   +L G APG T L +W    K        TP  S+                  
Sbjct: 73  QPSGSSAFILTGIAPGTTSLMVWTACSK--------TPRQSM------------------ 106

Query: 117 SESDGLIIVQGEADLAQKEQLEKILEGDPNVVSLVKYLKFAKTMSPMVKMQVKIVEFNKS 176
                 + V+G A  A    +  +   DP + S              V+  ++ VE +++
Sbjct: 107 ------VFVKGRATSALTS-VPSVPSDDPLLPS-------------QVQTDIRFVEVSRT 146

Query: 177 TLNNVGIKWETSMAGPAYGVAKGFTANPIFNVASPGQYTEAITKSITENIGVLDTRGWSS 236
            L           +   +GV   +       + + G     +T SI  N    +    + 
Sbjct: 147 KLKEA--------SASIFGVRGNWLFGSPRTLPTIGGI---VTPSIPVNNDNFNLTFATG 195

Query: 237 LGIVSGIGSQIQLLSEKGDARLLAQPNLTTRSGESASFLAGGEFPIR-SVSGLGAVDVEY 295
             +V+     +  L   G A  LA+P+L   SG+SASFLAGGE PI    SG  ++ +EY
Sbjct: 196 STLVA-----LNALEGSGFAYTLARPSLVALSGQSASFLAGGEIPIPVPSSGSDSIFIEY 250

Query: 296 KEYGIKLDIEPVVDEQQNIVSRVMAEVSSID----PSVAVDGVPGMLTRRTESVINVKNN 351
           KE+GI+L + P +  +  I  +V  EVS +D     S+A   VP +  RRT++ I++ + 
Sbjct: 251 KEFGIRLTLTPTIVGKNRIALKVAPEVSELDFTNAVSIAGTIVPALTVRRTDTSISLADG 310

Query: 352 ETIVISGLVNSEMSKIVNKFPLLGDIPILGELFKSRDFKDDKTELVIFVTPVVVYP 407
           E+ VISGL++S  +  VNKFP LGDIP+LG  F+      ++ EL++ VTP +V P
Sbjct: 311 ESFVISGLISSRNNSQVNKFPGLGDIPVLGAFFRDNTINREERELLMIVTPHLVQP 366