Pairwise Alignments

Query, 436 a.a., type II and III secretion system protein (RefSeq) from Shewanella loihica PV-4

Subject, 412 a.a., predicted fimbrial transporter (NCBI) from Escherichia coli BW25113

 Score = 94.4 bits (233), Expect = 6e-24
 Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 23/247 (9%)

Query: 164 VKMQVKIVEFNKSTLNNVGIKWETSMAGPAYGVAKGFTANPIFNVASPGQYTEAITKSIT 223
           V++   IV  N+ +L  +G+KW  + A  A GV +  T     +VA+        T  + 
Sbjct: 181 VELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATA-------TTHVG 233

Query: 224 ENIGVLDTRGWSSLGIVSGIGSQIQLLSEKGDARLLAQPNLTTRSGESASFLAGGEFPIR 283
            NIG ++ R          +  ++  L +K    ++A P L     + AS   G E P +
Sbjct: 234 FNIGRINGRL---------LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 284 SVSG-LGAVDVEYKEYGIKLDIEPVVDEQQNIVSRVMAEVSSIDPSVAVDGVPGMLT--- 339
             SG  GA  VE+KE  + +++ P V ++  I  R+   +S   P   +    G +    
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRI--RLKLHISQNVPGQVLQQADGEVLAID 342

Query: 340 -RRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGELFKSRDFKDDKTELVI 398
            +  E+ + VK+ ET+ + G+   +     +  PLLGDIP  G+LF+    +D++ ELV+
Sbjct: 343 KQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVV 402

Query: 399 FVTPVVV 405
           F+TP +V
Sbjct: 403 FITPRLV 409