Pairwise Alignments

Query, 436 a.a., type II and III secretion system protein (RefSeq) from Shewanella loihica PV-4

Subject, 655 a.a., variant type II secretion system secretin EtpD from Escherichia coli ECRC100

 Score =  102 bits (253), Expect = 5e-26
 Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 33/284 (11%)

Query: 140 ILEGDPNVV-SLVKYLKFAKTMSPMVKMQVKIVEFNKSTLNNVGIKWETSMAGPAYGVAK 198
           IL G P+V+  L   +       P V ++  I E   +   N+GI+W    AG A   + 
Sbjct: 322 ILTGAPDVIRDLENVISQLDIRRPQVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTST 381

Query: 199 GFTANPIFNVASPGQYTEAITKSITENIGVLDTRGWSSLGIVSGIGSQ---------IQL 249
           G    PI  +              T    +LD+   ++L + +GI +          +  
Sbjct: 382 GL---PITTMVQ------------TRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTA 426

Query: 250 LSEKGDARLLAQPNLTTRSGESASFLAGGEFPIRSVSGLGAVD-----VEYKEYGIKLDI 304
           LS      +LA P++ T     A+F  G E P+ S S   + D     VE K  GIKL +
Sbjct: 427 LSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRV 486

Query: 305 EPVVDEQQNIVSRVMAEVSSI-DPSVAVDGVPGML--TRRTESVINVKNNETIVISGLVN 361
           +P ++E  +++  +  EVS + D +VA     G    TR   + + V N ET+V+ GL++
Sbjct: 487 KPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLD 546

Query: 362 SEMSKIVNKFPLLGDIPILGELFKSRDFKDDKTELVIFVTPVVV 405
             +    +K PLLGDIP+LG LF+++  +  K  L++F+ P ++
Sbjct: 547 KSIRGSESKVPLLGDIPVLGHLFRAKSEQTAKRNLMLFIRPTII 590