Pairwise Alignments

Query, 436 a.a., type II and III secretion system protein (RefSeq) from Shewanella loihica PV-4

Subject, 710 a.a., type II secretion system secretin GspD from Dickeya dadantii 3937

 Score =  101 bits (251), Expect = 9e-26
 Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 30/348 (8%)

Query: 109 AAFPSLTVSESDGLIIVQG-EADLAQKEQLEK-ILEGDPNVV-SLVKYLKFAKTMSPMVK 165
           +AF S T S     I +QG E  +   +Q    I+   P+++  L + +       P V 
Sbjct: 343 SAFGS-TSSSGGRTITIQGKEVTVRAHDQTNSLIITAPPDIMRDLEQVINQLDIRRPQVL 401

Query: 166 MQVKIVEFNKSTLNNVGIKWETSMAGPAYGVAKGFTANPIF----NVASPGQYTEAITKS 221
           ++  I E   +   N+GI+W    AG       G   +          S G  T A   +
Sbjct: 402 VEAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAVIGTDQFRSNGTLTTAYASA 461

Query: 222 ITENIGVLDT--RG-WSSLGIVSGIGSQIQLLSEKGDARLLAQPNLTTRSGESASFLAGG 278
           ++   GV     RG WS L         +  LS      +LA P++ T     A+F  G 
Sbjct: 462 LSSFNGVTAGFYRGNWSML---------LTALSSDSKNDVLATPSIVTLDNMEATFNVGQ 512

Query: 279 EFPIRSVSGLGAVD-----VEYKEYGIKLDIEPVVDEQQNIVSRVMAEVSSI-DPSVAVD 332
           E P+ + S   + D     VE K  GIKL ++P ++E  +++ ++  EVSS+ D + + +
Sbjct: 513 EVPVLTGSQTTSADNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSTN 572

Query: 333 GVPGML--TRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGELFKSRDFK 390
              G+   TR   + + V N ET+V+ GL++    +  +K PLLGDIP LG LF+S+  +
Sbjct: 573 SSLGVTFNTRTVNNAVMVTNGETVVVGGLLDKTSVESNDKVPLLGDIPWLGSLFRSKSQE 632

Query: 391 DDKTELVIFVTPVVVY-PGQ-EEHDTQLNRGLEMAEEATKLEAFYILD 436
             K  L++F+ P ++  PGQ +E      R     ++  + E   +LD
Sbjct: 633 VRKRNLMLFLRPTIIRDPGQFQEASINKYRSFNNEQQQQRGEGNGVLD 680