Pairwise Alignments

Query, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 416 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  390 bits (1001), Expect = e-113
 Identities = 207/419 (49%), Positives = 282/419 (67%), Gaps = 5/419 (1%)

Query: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60
           M F  L +  PILKA+ DKGY  P+ IQAQAIP +L G+DV+  AQTGTGKTA F +P++
Sbjct: 1   MKFKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPII 60

Query: 61  ELLSQGPRARSK--QVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQIS 118
           + + + P A     ++R+L++TPTRELA QI E++  Y ++  +   V+FGGV    Q++
Sbjct: 61  QHIHEAPYANEPWAKIRSLIVTPTRELAIQIGENIDEYAKNTNVSHTVIFGGVKQGAQVA 120

Query: 119 QLKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPK 178
           QLK+GV ILVATPGRLLDL  Q  +S   ++  VLDEADRMLDMGFI+DIKK+L ILP K
Sbjct: 121 QLKKGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKILPKK 180

Query: 179 RQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLI 238
           RQ+L FSAT  D I  L+K +++NP ++ VTP +STA T+QQ I   +K+ K + L+ ++
Sbjct: 181 RQSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLLIHIL 240

Query: 239 QQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLV 298
           ++    QVL+FSRTKHGA+R+ + L+ K I AAAIHG+K+Q  R + L++FK   +RVLV
Sbjct: 241 EKEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKLRVLV 300

Query: 299 ATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADI 358
           ATDIAARG+DID+L  V+NFD+P+ PE Y+HRIGR+GRAG +G A+SL   EE   +  I
Sbjct: 301 ATDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENADVKAI 360

Query: 359 ERLIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSNGQR 417
           E+L  K +       F P    P T    K   + K  R  K +  + R  NR   G+R
Sbjct: 361 EKLANKNITVISDHPF-PQTDKPMTAQEKKEFNKEKQRR--KQEFFANRKKNRGGAGRR 416