Pairwise Alignments

Query, 755 a.a., DNA topoisomerase IV subunit A (RefSeq) from Shewanella loihica PV-4

Subject, 923 a.a., DNA gyrase, subunit A from Pseudomonas putida KT2440

 Score =  392 bits (1006), Expect = e-113
 Identities = 248/630 (39%), Positives = 361/630 (57%), Gaps = 71/630 (11%)

Query: 23  EAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSAQSKHKKSARTVGDVLGKYH 82
           ++YL+Y+M VI+ RALP   DGLKPV RR++YAMSELG      +KKSAR VGDV+GKYH
Sbjct: 19  QSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYH 78

Query: 83  PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEARLSKFSEVLLTE 142
           PHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D   + AAMRYTE R++K +  LL +
Sbjct: 79  PHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNA-AAMRYTEVRMTKLAHELLAD 137

Query: 143 LGQGTVDWGVNFDGTLKEPMVLPARLPHILLNGITGIAVGMATDVPPHNARELVDACVEL 202
           L + TVDW  N+DGT + P V+P R+P++L+NG +GIAVGMAT++PPHN  E++D C+ L
Sbjct: 138 LHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLAL 197

Query: 203 IDNPKVDLERLMELVPGPDYPTEAEIISPRTEIAKIYETGRGSIKARAVYSVES------ 256
           IDNP+V ++ LM+ +PGPD+PT A II+ R  I + Y TGRG I  RA   +E       
Sbjct: 198 IDNPEVTIDELMQHIPGPDFPT-AGIINGRQGIIEAYRTGRGRIYMRARSEIEDIDKVGG 256

Query: 257 -GEIVITALPHQASGGKILEQIAAQMQAKKLPMVADLRDESDHESPVRIVIVPRSNRVDC 315
             +IVIT LP+Q +  +++E+IA  ++ KK+  + +LRDESD +  +RIVI  R   V  
Sbjct: 257 RQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDG-MRIVIELRRGEVP- 314

Query: 316 DQLMAHLFATTDLEKNFRVNLNVLGLNGRPQVKGLKQLLTEWLEFRLTTVRRRLEHRLDK 375
           + ++ +L+  T L+  F +N+  L ++GRP++  LK LL  ++  R   V RR    L K
Sbjct: 315 EVVLNNLYQQTQLQSVFGINVVAL-VDGRPRLLNLKDLLEAFVRHRREVVTRRTVFELRK 373

Query: 376 VLARLHILEALMIAFLNIDEVIEIIRYHDDP---KAELMS-------------------- 412
              R HILE   +A  NID VI +I+    P   K  L+S                    
Sbjct: 374 ARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVERAGADSC 433

Query: 413 --------------RFNLTDEQANAILDLKLRHLAKLEEFKIKTEQSELEAEREKLELLL 458
                         ++ L+ EQA AILDL+L  L  LE  K+  E  E+  +  +L  +L
Sbjct: 434 RPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGELIRIL 493

Query: 459 SSDRRMKTLIKKELKQDAETYGDERRSPLVERSESRALSEQELVPAEAVTVVLSEKGWVR 518
           SS  R+  +I++EL+     YGD RR+ ++  S    L+  +++P E   V +S  G+  
Sbjct: 494 SSAERLMEVIREELEAIRAEYGDVRRTEILNASHD--LNYGDMIPEEERVVTISHGGY-- 549

Query: 519 CAKGHDIDPTALSYKAGDGFLCAASG------------RSNHATVFI-GSTGRAFATDTH 565
            AK   +       + G G   +A+G             ++HAT+ +  S G+ +   T+
Sbjct: 550 -AKTQPLSAYQAQRRGGKG--KSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKTY 606

Query: 566 TLPSA--RSQGEPVTTRFQLSPGESMAHAL 593
            +P A   ++G P+     L  GE +   L
Sbjct: 607 EIPEASRAARGRPLVNLLPLEEGERITAML 636



 Score = 38.5 bits (88), Expect = 2e-06
 Identities = 59/279 (21%), Positives = 109/279 (39%), Gaps = 26/279 (9%)

Query: 419 EQANAILDLKLRHLAKLEEFKIKTE--QSELEAEREKLELLLSSDRRMKTLIKKELKQDA 476
           E + A     L +L  LEE +  T   Q +LEA ++  +L    D    T+++ EL +  
Sbjct: 610 EASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEAEDTVLEGELVEAE 669

Query: 477 ETYGDERRSPLVERSESRALSEQELVPAEAVTVVLSEKGWVR------CAKGHDIDPTAL 530
           E   ++  +P           E    P  A   + +  G V+       A+       AL
Sbjct: 670 EVDEEDGDTP-----------EWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIAL 718

Query: 531 SYKAGDGFLCAASGRSNHATVFIGSTGRA--FATDTHTLPSARSQGEPVTTRFQLSPGES 588
             K GD  + AA        +     G+   FA          ++G       +L  G+ 
Sbjct: 719 KLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARG---VRGMKLGKGQR 775

Query: 589 MAHALLGEDGQCFLLASDAGYGFIGDYKDMVSRNKAGKALLSLPANAQ-VLPPKRVDKSR 647
           +   L+ E G   L AS+ G+G          R + G+ ++++    +  L    +    
Sbjct: 776 IISMLIPESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQE 835

Query: 648 SESILAITNEGRMLLFSVDALPQLAKG-KGNKIIGIASD 685
            E I+ I+++G ++   V  +  L++  +G  +I +A+D
Sbjct: 836 GEEIMLISDQGTLVRTRVGEVSSLSRNTQGVTLIKLAAD 874