Pairwise Alignments

Query, 530 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 555 a.a., Methyl-accepting chemotaxis protein CtpH from Pseudomonas putida KT2440

 Score =  159 bits (401), Expect = 3e-43
 Identities = 107/352 (30%), Positives = 184/352 (52%), Gaps = 8/352 (2%)

Query: 40  WLALLVIDYLFILSVLLAL----NSMFGRLRSA---AIHLSEGDLRVRLDTQ-EALGGPL 91
           WL LLV+    +L  LL+L     S+   +R        LS+G    R+D++ E   G L
Sbjct: 203 WLGLLVMLASAVLVGLLSLWLVNRSLIEPIRQLIEYVAQLSQGSFAARVDSRREDELGRL 262

Query: 92  FKAFNQIGEDVSRTVFSLSKSAQQLVRVADTVQADSQVSKTGALRQKDDVEEAKQIVSKL 151
            +A N + + ++ TV  L  +AQ+L   +  +++ +     G   Q    ++    + ++
Sbjct: 263 ARAANTLRDFLADTVGRLQDNAQELEGASGQLRSIAGDMARGTHDQFQRTDQVATAMHEM 322

Query: 152 FETTAEVSSFCESTSQLASESKRQADRGKQEMRSLETALEDVGEQFAASDQNFEQLKQES 211
             T  EV+      ++ A ++   A  G+Q M+     +  V  + A +      L+ +S
Sbjct: 323 SATAQEVARHAAEAARAADDADHSAQAGEQVMQQTIDIIGLVNREIAGTATVIRDLEHDS 382

Query: 212 LQIGQVVETIKGIAEQTNLLALNAAIESARAGELGRGFAVVADEVRSLALRTQVATEDIN 271
            +IG+V+E I+GIAEQTNLLALNAAIE+ARAGE GRGFAVVADEVRSLA RT  +  +I+
Sbjct: 383 TRIGKVLEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTAASIAEIH 442

Query: 272 NKIVNLQTQINDAIAAMQKNRQSVLHSQSVANEAESHFEELVSQIDAIDALGQEIAVASQ 331
             I  +Q+   +A+ A++  +Q          +A    + +   ++AI  + ++IA A++
Sbjct: 443 QIIEAVQSGAVEAVKAIESGQQRSQEGAEQVEQAGQMLQRITQAVEAIRDMNRQIATAAE 502

Query: 332 HQVEQTQMLETCLVEVDKVSDENVKATQETLLASITVRNLAGEIDSLLHRFA 383
            Q    + +   L+E+ +++  N +A Q T  A   +  L+G++  +  R +
Sbjct: 503 EQTSVAEDISRNLIEITRIATANQEAVQHTEQAGQRLHGLSGQLGEVTSRLS 554



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 25/242 (10%)

Query: 194 GEQFAASDQNFEQLKQESLQIGQVVETIKGIAEQTNLLALNAAIESARAGELGRGFAV-- 251
           G   AAS+Q  E ++Q      Q   +I   AE+T  L L   + SA    L   + V  
Sbjct: 167 GVDRAASEQMSELVEQLRADARQRAASINASAERTVWLGLLVMLASAVLVGLLSLWLVNR 226

Query: 252 -VADEVR------------SLALRTQVATEDINNKIV----NLQTQINDAIAAMQKNRQS 294
            + + +R            S A R     ED   ++      L+  + D +  +Q N Q 
Sbjct: 227 SLIEPIRQLIEYVAQLSQGSFAARVDSRREDELGRLARAANTLRDFLADTVGRLQDNAQE 286

Query: 295 VLHS----QSVANEAESHFEELVSQIDAIDALGQEIAVASQHQVEQTQMLETCLVEVDKV 350
           +  +    +S+A +      +   + D +     E++  +Q              + D  
Sbjct: 287 LEGASGQLRSIAGDMARGTHDQFQRTDQVATAMHEMSATAQEVARHAAEAARAADDADHS 346

Query: 351 SDENVKATQETL-LASITVRNLAGEIDSLLHRFATDSEQIGREDTRRDKLIEWSDALDLN 409
           +    +  Q+T+ +  +  R +AG   +++     DS +IG+       + E ++ L LN
Sbjct: 347 AQAGEQVMQQTIDIIGLVNREIAGTA-TVIRDLEHDSTRIGKVLEVIRGIAEQTNLLALN 405

Query: 410 LA 411
            A
Sbjct: 406 AA 407