Pairwise Alignments

Query, 388 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

Subject, 378 a.a., BamA/TamA family outer membrane protein from Serratia liquefaciens MT49

 Score =  213 bits (543), Expect = 6e-60
 Identities = 118/356 (33%), Positives = 188/356 (52%), Gaps = 7/356 (1%)

Query: 34  VDEILDVFGADGEFDESKTIDMSYLPTAYYTPEKKFGVGLLMVGLYKTDGAAPEEQPSSL 93
           +DE+L   G+D +FD SKTID   LP  +YTPE   G+G  +VG+Y+ D      Q S+L
Sbjct: 29  IDEMLAPLGSDNQFDSSKTIDWGVLPGPFYTPELGLGIGTAVVGIYRPDSQDKVSQNSTL 88

Query: 94  VLNSFVSMNNSYGVEVENMTFFNGGKQRLLLGLELHNEASVYYGRGIADGNIDSNHHEFD 153
            L  F S   ++GV  +N +FF   + R      L+N  + ++G G   G+ + N  ++ 
Sbjct: 89  ALKGFFSTTGAFGVGFQNHSFFADDQWRFFADGSLNNMPTYFWGTGYQAGHNNGNKEKYT 148

Query: 154 EQLYSFTPRWMTQVADNYFVGVGVDFTYASADKFTRVEGDIPLPSDGILPSNFSSGLVVT 213
           +Q +   P+ + ++A+  + GVG DF+   A K    +  + L +     S+ SSG+  +
Sbjct: 149 QQAFQIAPQLLYRIANATYAGVGWDFSSTHASKTDEDDSSL-LRAQKAGVSSLSSGVSGS 207

Query: 214 SIYDSRDYRLNATKGWLFQLDAGLYQNSEYDSFAKYDLELANYIDLSTTSWLSQMPGLIA 273
             YD+RD+  NA++G   +L +  Y   E    ++++     Y    + S  S    ++A
Sbjct: 208 LSYDTRDFVSNASRGQYLRL-SDTYFAPELGGDSRFNTVEGQYNAYHSLSAKS----VLA 262

Query: 274 WQVQGHFTSGDVPWNMLPDLGGSSAMRGYIKGRYRDKQMMMGQVEYRLPIFQRYGMVFWG 333
                  T+G+VPW+ L  LG    MRGY +GRYRD+ +   Q+EYR  +  R+G V W 
Sbjct: 263 LDAYSRLTTGEVPWDRLSGLGDDKRMRGYYQGRYRDRNVFSSQIEYRRKLNWRHGYVLWA 322

Query: 334 GVGSVADKVSDLND-ELLTSYGTGFRFKIKDNINLRLDVGVGENETNFYLNVNEVF 388
           G G+++ K  DL     L + G G+RF+ K  +N+RLD G+G   + FY  V E F
Sbjct: 323 GAGTLSSKAGDLGQGPWLPTLGAGYRFEFKPKMNVRLDFGIGRGSSGFYFQVGEAF 378