Pairwise Alignments

Query, 968 a.a., ATP-dependent helicase HepA (RefSeq) from Shewanella loihica PV-4

Subject, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

 Score =  885 bits (2287), Expect = 0.0
 Identities = 472/962 (49%), Positives = 642/962 (66%), Gaps = 26/962 (2%)

Query: 6   GQRWISDTESELGLGTVIGLEGRMVTLMFPATDENRMFARDDAPLTRVIYNPGDIIESHE 65
           GQRWISD+E+ELGLGT++  +GR++T+++PAT + R ++  +APLTRV ++PGD I   E
Sbjct: 8   GQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYSLRNAPLTRVRFSPGDQITHFE 67

Query: 66  GWSLKVSEIEEKNQLVIYHGIHTETGEEVSLRETLLNHNIRFNKPQDRLFAGQIDRLDRF 125
           GW L V E+E+ + L++YHG+  +  +  +L ET L++ I+F    DRLFAGQID L  F
Sbjct: 68  GWKLTVREVEDIDGLMVYHGLDGQN-QPRTLPETQLSNFIQFRLASDRLFAGQIDPLSWF 126

Query: 126 GVRYQSQLLRHKLATSDLLGLQGPRVGLIPHQQWIAHEVGQRFAPRVLLADEVGLGKTIE 185
            +RY +     K   S L GL G R   I HQ  IA EV  R APRVLLADEVGLGKTIE
Sbjct: 127 SLRYNTLQHTSKQMQSALWGLGGCRAQPIAHQLHIAREVADRSAPRVLLADEVGLGKTIE 186

Query: 186 AGLIIHQQLLTGRAERILIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAYADHDNPF 245
           AGL+IH+QLL+GRA R+LI+VP+ L+HQWLVEM RRFNL+ ++FD +R +E+  D  NPF
Sbjct: 187 AGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIES--DASNPF 244

Query: 246 YTEQLVICSLE-LLRKKKRLDQALDADWDLMVVDEAHHLEWTEEEPSRAYRVVEALSEVV 304
              QL + +LE L+  +K  D    A WDL+VVDEAHHL W E++ S  Y +VE L++V+
Sbjct: 245 EDAQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDQVSAEYGLVEQLAQVI 304

Query: 305 PGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLKEEESYKEVASAADALASGKRLP 364
           PGVLLLTATP+QLG  SHFARLRLLDP+RF+D  AF  E E Y+ VA A   L    RL 
Sbjct: 305 PGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPVAEAVQELLDEGRLS 364

Query: 365 DEAVASLTELLNEKDITPALRLIEDESVDNEQRDQARSELLQELLDRHGTGRVLYRNSRA 424
            +A A++   L  +     L  + D         QA + L++ELLDRHGTGRVL+RN+RA
Sbjct: 365 PKAHATILGFLGAEG-EALLAAVSDGDT------QASARLIRELLDRHGTGRVLFRNTRA 417

Query: 425 SVKGFPTRIFNAHPQTMPAQYKTAARVSDMMGGQTDLTAKVKQALSPEKLYQAFE--SDS 482
           +++GFP R  + +P   P QY+             DL A     L PE  +QA    +D 
Sbjct: 418 AIQGFPERQLHPYPLPTPEQYR-------------DLPAGEHAELYPEVAFQAQGEVADD 464

Query: 483 ASWWKFDPRVDWLIDFLKNHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMSII 542
             WW+FDPRVDWLID LK  +  KVL+I + AETA+ LE+ALR R GI A+VFHEGMSI+
Sbjct: 465 ERWWRFDPRVDWLIDTLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPASVFHEGMSIL 524

Query: 543 ERDKAGAYFAQESGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDRIG 602
           ERD+A AYFA E  GAQ LICSEIGSEGRNFQFA HLV+FDLP +PDLLEQRIGRLDRIG
Sbjct: 525 ERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRIG 584

Query: 603 QANDVEIHLPYLANTAQENLMNWYHKGLNAFEQTCPTGHILFNEFSEELLTQLVYRDEDK 662
           Q + +++H+PYL ++ QE L  WYH+GLNAF  TCPTG+ L ++F   LL  L   +   
Sbjct: 585 QKHTIQLHIPYLQDSPQERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLPLLEGGENKA 644

Query: 663 FTQLLNHTQSRYKALKKAMEQGRDKLLEINSHGGDKAQKLVENLAARDQDTQLIGSVIRL 722
           +  L+   +S  + L+  +  GRD+LLE+NS G  + Q LVE +  +D    L   +  L
Sbjct: 645 WDTLVADARSERERLEAELHTGRDRLLELNSGGAGEGQALVEAILEQDDQFALPIYMETL 704

Query: 723 WDIIGVEQEDSGENAIVLHPSEHMMFPTYPGLPEDGITVTFDREMALSRDDIALITQEHP 782
           +D  G++ ED  ENA++L PSE M+  ++P   ++G+T+T+DR  ALSR+D+  +T EHP
Sbjct: 705 FDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRGQALSREDMQFLTWEHP 764

Query: 783 LVQTGLDLITSSETGTTSVAVLKNKALPAGTIFLELIYMADASAPRSSQLYRYMPPTPVR 842
           +VQ G+DL+ S   G T+VA++KNKAL  GT+ LEL+++++  APRS QL RY+PP  +R
Sbjct: 765 MVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLFVSEVVAPRSLQLGRYLPPAALR 824

Query: 843 VLLDKNGNNLSQNVSYESFDKQLSAVNRHIASKLVNASQTLLHPLFAKGEEFAQAAMKQL 902
            LLD NGN+L+  V++E+ + QL +V R  A+K V A + +L    + GEE    A  + 
Sbjct: 825 CLLDANGNDLASRVAFETLNDQLESVPRASANKFVQAQRDVLAKRISGGEEKILPAHNER 884

Query: 903 TEEASNKMTQQLTAELERLEALKAVNPNIRDEELEHLRNQMVELGNYLDACQLQLDAVRL 962
             EA  ++  +   EL RL AL+AVNP++RD E++ LR +  +    L+   L+L+A+R+
Sbjct: 885 VAEAQRRLAAEADEELARLVALQAVNPSVRDSEIDALRKRREDGLAMLEKAALRLEAIRV 944

Query: 963 VL 964
           ++
Sbjct: 945 LV 946