Pairwise Alignments

Query, 540 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

Subject, 1102 a.a., mechanosensitive channel protein, intermediate (smaller, MscS-like) conductance, K+ efflux from Pseudomonas putida KT2440

 Score =  106 bits (264), Expect = 5e-27
 Identities = 69/209 (33%), Positives = 105/209 (50%), Gaps = 2/209 (0%)

Query: 329  SLSGKTVFALGLMIALSQLGFELGPLLAGFGVAGVIIGFALQDTLSNFASGMMILIYRPY 388
            +L   T+  +G++  LS LG     L        V +GF +Q+  +NF SG+MIL  RP 
Sbjct: 870  TLLSYTIVGIGIVSTLSTLGVSWDKLQWLVAALSVGLGFGMQEIFANFISGIMILFERPV 929

Query: 389  DVGDLINAAGVTGKVSQMSLVSTTIKTLDNQRLIIPNNK-IWGDTINNITVEHQRRVDMT 447
             +GD I    ++G VS++ + +TTI   D + +I+PN   I G  IN    +   RV + 
Sbjct: 930  RIGDTITIGNLSGTVSKIRIRATTITDFDRKDIIVPNKTFITGQLINWSLTDTVTRVTLK 989

Query: 448  FGIGYGDNIEKAEQVLRGIVDEHPKVLKQPEPTVKLHLLGESSVDFVVRPWVKP-EDYWD 506
             GI YG +++    +L     E+P+VLK PEP V     GESS+D  +R  V+   D   
Sbjct: 990  LGIDYGSDLDLVRDLLLKGAHENPRVLKDPEPIVYFLNFGESSLDHELRMHVRDLGDRNP 1049

Query: 507  VYWDITRAVKMRFDQEDISIPFPQRDVHI 535
               +I R +   F   +I I   Q +V +
Sbjct: 1050 TLDEINRYINREFKAHNIKISVRQVEVFL 1078