Pairwise Alignments

Query, 366 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

Subject, 911 a.a., ribosome-associated ATPase/putative transporter RbbA from Escherichia coli ECRC102

 Score =  166 bits (419), Expect = 3e-45
 Identities = 102/347 (29%), Positives = 180/347 (51%), Gaps = 13/347 (3%)

Query: 5   SLRRIKSITTKEIRQLKRDRITFGMVVMIPLIQLLLFGYAINTDVRNVPVVVVDQSHSAA 64
           SLRR+ S + +E  +L+RD +   + +M  +I +L+ GY I+ DV N+   V+D+  + +
Sbjct: 539 SLRRLFSYSRREALELRRDPVRSTLALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVS 598

Query: 65  GRWIVEAVKVTQVVSIEKHYASAEEAEAAITRGEVRAALILPPNLTEKLANGET--LGQW 122
            +     +  ++    +    S +E +  +  G++  A+ +PPN    +A G    LG W
Sbjct: 599 SQAWTLNLSGSRYFIEQPLLTSYDELDRRMRAGDITVAIEIPPNFGRDIARGTPVELGVW 658

Query: 123 VVDGSDTMVASAI---------SQLRNMPLDQITGQDTQRLPTFEVALFYNPEQRSAVNI 173
           + DG+    A  +         S L+++   Q T      L   E    YNP+ +S   I
Sbjct: 659 I-DGAMPSRAETVKGYVQAMHQSWLQDVASRQSTPSSQSGLMNIETRYRYNPDVKSLPAI 717

Query: 174 VPGLIAVILTMTMILFTSAAIVRERERGNLELLITTPIKPLELMLGKIVPYILVGLVQMT 233
           VP +I ++L M   + ++ ++VRE+E G++  L  TP    E +LGK +PYI +G++   
Sbjct: 718 VPAVIPLLLMMIPSMLSALSVVREKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFF 777

Query: 234 IILGLGHLIFDVPINGAIAQLLMGTLLFIAASLTLGLIISTIAKTQLQAMQMT-IFIILP 292
           ++ GL   +F VP  G+   L +  LL+I  +  +GL+IST  K+Q+ A+  T I  ++P
Sbjct: 778 LLCGLSVFVFGVPHKGSFLTLTLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIP 837

Query: 293 TILLSGFMFPFEAMPKPAQWIAELLPATHFMRIIRAIVLRGGALSDM 339
               SG + P  ++  P +WI E+ P +HF+ I R    +   L+D+
Sbjct: 838 ATQFSGMIDPVASLEGPGRWIGEVYPTSHFLTIARGTFSKALDLTDL 884