Pairwise Alignments

Query, 366 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

Subject, 381 a.a., ABC transporter permease from Dickeya dianthicola ME23

 Score =  166 bits (419), Expect = 1e-45
 Identities = 107/375 (28%), Positives = 195/375 (52%), Gaps = 17/375 (4%)

Query: 5   SLRRIKSITTKEIRQLKRDRITFGMVVMIPLIQLLLFGYAINTDVRNVPVVVVDQSHSAA 64
           S RR++++  KE RQ+ RD  +  +  +IPL+ L +FGY IN D   + V V+ +  SA 
Sbjct: 11  SWRRLRALCLKETRQILRDPSSALIAFVIPLLLLFIFGYGINLDSSRLNVGVLVEQRSAE 70

Query: 65  GRWIVEAVKVTQVVSIEKHYASAEEAEAAITR---GEVRAALILPPNLTEKLANGETLG- 120
              +  A   +  +++      ++   A I R   G++R  L++P +  ++LA+ +    
Sbjct: 71  ADSLARAFTGSPYLAV----TLSDNRPALIKRMQAGQIRGLLVIPADFAKRLAHPQDRAP 126

Query: 121 -QWVVDGSDTMVASAIS-------QLRNMPLDQITGQDTQRLPTFEVALFYNPEQRSAVN 172
            Q + DGS+   A  +        Q       Q  G   Q L   +   ++N    S   
Sbjct: 127 IQVITDGSEPNTAQFVQGYAQGVWQRWQQQYAQDHGGRYQPLIEVQTRYWFNAAAISRHF 186

Query: 173 IVPGLIAVILTMTMILFTSAAIVRERERGNLELLITTPIKPLELMLGKIVPYILVGLVQM 232
           I+PG I +I+T+   + TS  I RE ERG +E L++T +   EL+  K++PY ++G++ M
Sbjct: 187 IIPGAITIIMTVIGAILTSLVIAREWERGTMEALLSTQVTRTELLFAKLLPYYVLGMIAM 246

Query: 233 TIILGLGHLIFDVPINGAIAQLLMGTLLFIAASLTLGLIISTIAKTQLQAMQMTI-FIIL 291
            + + +   +  VP  G++  L   + LF+A++L +GL+IST+ + Q  A  + +    L
Sbjct: 247 ALCVAVAVFVLGVPYRGSLWLLFGISSLFLASTLGMGLLISTLTRNQFNAAMVALNAAFL 306

Query: 292 PTILLSGFMFPFEAMPKPAQWIAELLPATHFMRIIRAIVLRGGALSDMQFDALWLIGFTL 351
           P ++LSGF+F   +MP   Q ++ L+PA +F+  ++ + L G   S +  + L+L+   +
Sbjct: 307 PAVMLSGFIFEIHSMPMLVQAVSYLIPARYFVSTLQTLFLAGNISSVLLMNLLFLMTSAV 366

Query: 352 VGILVASLRFNKRLD 366
             I + + +  +RLD
Sbjct: 367 FFIGLTAWKTRRRLD 381