Pairwise Alignments

Query, 323 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

Subject, 355 a.a., putative membrane fusion protein (MFP) of efflux pump from Escherichia coli BL21

 Score = 96.7 bits (239), Expect = 8e-25
 Identities = 72/288 (25%), Positives = 145/288 (50%), Gaps = 19/288 (6%)

Query: 9   IVALIALVAILAYGLML-AHTPKAERLQ-GQIEAREYNISSKVPGRVAQVMVRRGDQVAE 66
           +V L+A+ AI+A+ L+  A  P+   +  G+IEA E +I+SK+ GR+  ++V+ G  V E
Sbjct: 12  VVGLLAVAAIVAWWLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGQFVRE 71

Query: 67  GDLLFAIDSPELN-------AKLMQAQGGRDAAKALQQEADNGARKQQVAASKEQWLKAK 119
           G++L  +D+  L        A++ +AQ    AA+AL ++  +  R  Q   ++ Q     
Sbjct: 72  GEVLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQ----- 126

Query: 120 AAATLAETTYKRVEALFSEGVLARQKRDEAFTQWQAAKYTQQAAYAMYQMAE---EGARE 176
           A        + R  +L   G ++ Q+ D+     ++A+   ++A A    ++   E AR 
Sbjct: 127 AELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAART 186

Query: 177 ETKAAAEGNARMAEGAVKEVSAILADSQMRSPKSGEVSEVLLHPGELAPSGFPVVSVIDM 236
                A+     A+   + ++A + DS++++P+ G V   +  PGE+  +G  V++++D+
Sbjct: 187 NI-IQAQTRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDL 245

Query: 237 QDAWAVFQVREDQLKGFKVGDTLEVEIPALGE-RYPFKVAHISVMGHF 283
            D +  F +  +Q    K+G    + + A  + R P  ++ ++ +  F
Sbjct: 246 SDVYMTFFLPTEQAGTLKLGGEARLILDAAPDLRIPATISFVASVAQF 293