Pairwise Alignments

Query, 323 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

Subject, 354 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score = 97.1 bits (240), Expect = 6e-25
 Identities = 85/306 (27%), Positives = 141/306 (46%), Gaps = 18/306 (5%)

Query: 6   ILAIVALIALVAILAYGLMLAHTPKAERLQGQIEAREYNISSKVPGRVAQVMVRRGDQVA 65
           +LAI A  A   + A GL            G+IEA E +IS+K  GR+  +MVR GD V 
Sbjct: 14  VLAIAAYFAWSKLTAEGLPSGFVAS----NGRIEAVEIDISTKTAGRLQDIMVREGDFVK 69

Query: 66  EGDLLFAIDSPELNAKLMQAQGGRDAAK-----ALQQEADNGARKQQVAASKEQWLKAKA 120
            G +L  +D+ +L AK  QA+     AK     A    A   A K    A  EQ    KA
Sbjct: 70  AGQVLAQMDTAQLEAKKRQAEAQLRRAKIAIDTAHSLVAQREAEKTSALAVVEQ---RKA 126

Query: 121 AATLAETTYKRVEALFSEGVLARQKRDEAFTQWQAAKYTQQAAYAMYQMAEEGAREETKA 180
               A  TY R   L +   +++Q  D++    Q+A+ T  +A A    A + A    KA
Sbjct: 127 QLDSASKTYARSRQLLTGNAVSQQIVDDSEATEQSARATLASAQASL-AASDAAINAAKA 185

Query: 181 A---AEGNARMAEGAVKEVSAILADSQMRSPKSGEVSEVLLHPGELAPSGFPVVSVIDMQ 237
               AE     A+  ++ +   + D+ ++SP+ G V   +  PGE+  +G  V++++D+ 
Sbjct: 186 QIIDAEAAVDAAQADIESIETDIVDATLKSPRDGRVQYRIAQPGEVLSAGGRVLNLVDLG 245

Query: 238 DAWAVFQVREDQLKGFKVGDTLEVEIPALGE-RYPFKVAHISVMGHFATWRSTESGHDFD 296
           D +  F +   +     +G  + + + A  +   P KV+ ++ +  F T ++ E+  +  
Sbjct: 246 DVYMTFFLPTAEAGRTSMGSDVRLILDAAPQYTIPAKVSFVADVAQF-TPKTVETEEERQ 304

Query: 297 MRTFEM 302
             TF +
Sbjct: 305 KLTFRV 310