Pairwise Alignments

Query, 636 a.a., regulatory protein CsrD (RefSeq) from Shewanella loihica PV-4

Subject, 648 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  137 bits (344), Expect = 2e-36
 Identities = 135/513 (26%), Positives = 235/513 (45%), Gaps = 32/513 (6%)

Query: 134 GGLVFLVGCIAVGLLVRRGYLWLALQLQGIEDLAKRSHLILSGDYDKALAETGHGRPRLI 193
           G L +L+ C A   ++  G L L  QL+ ++ + ++SH I   ++            R +
Sbjct: 150 GSLGWLLLCGAASAVL--GALLLRRQLRPLDYMVEQSHAIARREFLSLPELPRTPELRRV 207

Query: 194 NRALTQMLLELDDAQKQRARFDQFIRSNTFLDPESGIGNRLFLKNRLD-ALSNKDGMMAP 252
            +A+ QM+ +L     ++A   + +R+ ++ D  +G+ NR + + +L+  +SN +   A 
Sbjct: 208 VQAMNQMVEKLKALFTEQAERSERLRAESYQDSLTGLSNRRYFEMQLNNRVSNLEDARA- 266

Query: 253 GVLLLLEMEDLDLLQ-----QEADEF--SIQELLTQTIGGISHLLDSQANSIFSRRSYNQ 305
           G LLLL ++ L  L      Q  D+   ++ E L +T          + N + SR    +
Sbjct: 267 GYLLLLRVQGLAGLNARLGGQRTDQLLQAVGEQLRRTCASYP-----ETNDLISRSRGGE 321

Query: 306 FAIVVPQISLADAEKLAARLLKVCLSQPLEGVNNRDDFFHIGVAYFKVGESKEQLIEEAE 365
           FA++ P +   +A  LA  L     S    G ++ D    IG+A F  G+S + L++ A+
Sbjct: 322 FAVLAPGMVHEEAVHLAQALEATLQSLHETGASDIDPVACIGLAPFSPGDSPQALLKLAD 381

Query: 366 MALRAAQFQGNSGWFMYDKG----AVDEEFARGSVRWRSFLEYALVNKRVVPFTQAILD- 420
            AL  A+ Q   GW   ++G    A D + A     W   L+ A +N     F Q +++ 
Sbjct: 382 EALARAENQPTPGWVCLEQGVAAVAADSQHA-----WHERLDQAFINGHFELFFQPVIEC 436

Query: 421 -SDGKEHHSEVSCRLRDSSDNLVRATLFLPMAIKCGLIPQIERQVIEAVLFDLLPKSPKD 479
            S  +  H +V  RLRD     + A  FLP   + G +P+++  V+E VL  L       
Sbjct: 437 ASSQRVLHHKVISRLRDGQGEALPAGRFLPWLERFGWMPRLDVLVLEKVLAHL----RGH 492

Query: 480 QRKYSINLSLDTLTSRAFIRWLQTTLLEYRHLTPRLIFEINEDILVNNLAKLKAPLDMIA 539
            +  ++NLS  TL     ++ +   L +   L PRL+FEI E+ L    A L+     + 
Sbjct: 493 DQVLALNLSAATLADPKALQRVFELLGQNAALGPRLVFEIGEEQLPEQ-AALEQLTRRLH 551

Query: 540 KMGASLCVDRVGQQVVSTQYLQSCRVDLIKLHRSIVRQIHLRQENQLFVRSLIGGLYRTE 599
            +G  L + R G +      L    +  +K+  S +R I   Q  +LF+ ++    +  +
Sbjct: 552 GLGFGLALQRFGGRFSMIGNLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSID 611

Query: 600 VQVFAEGVESLEEWQTLKILGVSAGQGSFFSDP 632
           + + AE VE+  E   L  +GV   QG    +P
Sbjct: 612 LPLIAERVETEGERLVLLEMGVGGIQGQLVGEP 644