Pairwise Alignments

Query, 731 a.a., primosomal protein N' (RefSeq) from Shewanella loihica PV-4

Subject, 739 a.a., primosomal protein N' from Pseudomonas simiae WCS417

 Score =  674 bits (1738), Expect = 0.0
 Identities = 356/736 (48%), Positives = 477/736 (64%), Gaps = 13/736 (1%)

Query: 5   VEVALPVPMRQAFSYRVKEADLD-KAQVGVRVRVPFGRQQLIGLVTGLSQSCDLAPNQIK 63
           + +ALP P+R+ F YR     L  + Q G+RVR PFGR+++IG++  ++   ++   ++K
Sbjct: 6   LRLALPSPLRRLFDYRAPAGVLRAQLQPGMRVRAPFGRREMIGILVEVADHSEVPAEKLK 65

Query: 64  SVITFLDHEGVLPPSLYKLTQWAARYYFCSLGQMLSQALPVALRKGAEVEAQQLQVWRVT 123
             +  LD    LPP+L+KL  W A+YY  SLG  LS ALPV LR+G   EA+Q + W + 
Sbjct: 66  PALAMLDATPPLPPALFKLCLWTAQYYQHSLGDTLSWALPVLLRQGELAEARQERFWSMV 125

Query: 124 AAGQEADIDLLKRAPAQRKLLLALLETE--LSQDELNALEQSKTALKALVERGWIECIER 181
             G   D   + RAP QR+ L  L +    ++   L+ L  SK +L  L+ +G ++   R
Sbjct: 126 P-GARLDDPRIARAPRQREALATLAQHPHGVAHQLLSKLMLSKDSLDLLLAKGLVQVEIR 184

Query: 182 RIESNLSWRDGLELDETPHQLNPEQAIAVAMLNQQ-QGYHCTLLEGITGSGKTEVYLALL 240
           +   +      L   E P  LNPEQ  A   +      +H  LL G+TGSGKTEVYL L+
Sbjct: 185 KHAPDARHEHWLAQPELP--LNPEQRAAYEAIRAGFDSFHAFLLAGVTGSGKTEVYLQLI 242

Query: 241 ETVLKQGKQALILVPEIGLTPQTISRFKRRFKVQVAVIHSGLTDNQRLSAWRLARSGEAA 300
              L+ GKQAL+L+PEI L PQT++RF++RF  ++A++HS + D +RL +W  AR GEA 
Sbjct: 243 RETLQAGKQALVLIPEINLGPQTLARFEQRFNARIALVHSAVNDRERLESWLAARDGEAD 302

Query: 301 IIIGTRSALFTPMRYPGIIILDEEHDASFKQQEGIGYHARDLAVMRGHLESIPVLLGSAT 360
           IIIGTRSALFTPM+ PG+II+DEEHD S+KQQEG+ YHARDLA++R   E IP++LGSAT
Sbjct: 303 IIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRARQEDIPIVLGSAT 362

Query: 361 PSLETLQNALSGRYQHLSLGSRAGAAEKVRQGIIDIRNQPLKNGLSHGLLNEMRIHLDAG 420
           PSLE+L NA +GRY  L L  RAG A++ R   +D++++PL +G+S  +   +   L AG
Sbjct: 363 PSLESLHNAYTGRYGLLRLNERAGGAKQPRFLRLDVKSRPLDSGISGPMQQAIGQTLAAG 422

Query: 421 NQVLLFLNRRGFAPALLCHECGHLHECDRCDAFFTVHQSLGEIRCHHCGNQYAIPRQCHQ 480
            QVL+FLNRRGFAP LLCH+CG + EC+RCDA  TVHQ  GE+RCHHCG+   +PR C Q
Sbjct: 423 QQVLVFLNRRGFAPTLLCHDCGWMSECERCDARMTVHQRYGELRCHHCGHVERVPRHCPQ 482

Query: 481 CGSTMLMGQGVGTEQLADALAKEFPNYPVVRIDRDTTSRKGALETHLNAIHKGEYKILVG 540
           CG   L   G GTE+  + L   FP+YPV+R+DRD+TSRK A+      I KG   IL+G
Sbjct: 483 CGKVDLRPVGAGTERAEERLGILFPDYPVLRVDRDSTSRKDAMNQLFATIQKGHPCILIG 542

Query: 541 TQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVSGRAGRARKPGTVLLQT 600
           TQMLAKGHHFP VTLV +LD DG LFS DFRA ER  QL  QV+GRAGRA +PG V++QT
Sbjct: 543 TQMLAKGHHFPRVTLVSILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGRVIIQT 602

Query: 601 HQCDNPILRELMHKGYGEFARGQLEERKQALLPPAWHMLLLRAEAHKAEDADAFLAQVAQ 660
           H  D+P+L +L  +GY  FA   L ER+ A LPP  H+ LLRAEAHK   A+ FL +   
Sbjct: 603 HLADHPLLIQLTEQGYFAFAEQALSERRAAGLPPFSHLALLRAEAHKPGQAEGFLDEACS 662

Query: 661 LLPQ------DEQCEIIGPMPAPMDRKAGKFRRQLMFQTKTRGLLQQAFEQALPQIEALP 714
              +          E++GP+PAPM+R+AG++R QL+ Q  +R  L +     L  +E +P
Sbjct: 663 AAERLLGELGLSGIELLGPVPAPMERRAGRYRAQLLLQATSRAPLHRLLSSWLLALEQMP 722

Query: 715 LAKRCRWSLDRDPQDL 730
             ++ RWSLD DP DL
Sbjct: 723 SGRQVRWSLDVDPVDL 738