Pairwise Alignments

Query, 731 a.a., primosomal protein N' (RefSeq) from Shewanella loihica PV-4

Subject, 739 a.a., primosome assembly protein from Pseudomonas putida KT2440

 Score =  669 bits (1726), Expect = 0.0
 Identities = 359/739 (48%), Positives = 481/739 (65%), Gaps = 15/739 (2%)

Query: 3   LFVEVALPVPMRQAFSYRVKEADLDKAQV--GVRVRVPFGRQQLIGLVTGLSQSCDLAPN 60
           + + +ALP P+R+ F Y+   A + +  +  G+R+RVPFGR+++IG++  +    ++  +
Sbjct: 4   VILRLALPSPLRRLFDYKAP-ASMARLTLTPGMRIRVPFGRREMIGVLIEVCTQSEVPAD 62

Query: 61  QIKSVITFLDHEGVLPPSLYKLTQWAARYYFCSLGQMLSQALPVALRKGAEVEAQQLQVW 120
           ++K     LD    +P SL+KL  W A+YY  SLG  LS ALP  LR+G   E +Q + W
Sbjct: 63  KLKPASALLDPVSPIPASLFKLCLWTAQYYQHSLGDTLSWALPTLLRQGEAAEMRQERFW 122

Query: 121 RVTAAGQEADIDLLKRAPAQRKLLLALLETE--LSQDELNALEQSKTALKALVERGWIEC 178
            + A G   +   + RAP QR  L  L +    ++   L  L  +K +L  L+ +  ++ 
Sbjct: 123 HI-APGARLEDPRIARAPRQRDALKTLAQHPHGVAHSLLAKLNLNKDSLDLLLAKDLVQI 181

Query: 179 IERRIESNLSWRDGLELDETPHQLNPEQAIAV-AMLNQQQGYHCTLLEGITGSGKTEVYL 237
             RR    L     L   E P  LN EQ  A  A+     G+   LL G+TGSGKTEVYL
Sbjct: 182 ETRRHLPALRHEHWLAQPELP--LNEEQREAFDAVCEGFGGFGAFLLAGVTGSGKTEVYL 239

Query: 238 ALLETVLKQGKQALILVPEIGLTPQTISRFKRRFKVQVAVIHSGLTDNQRLSAWRLARSG 297
            L+   L+ GKQAL+L+PEI L PQT++RF++RF  ++A++HS + D +RL AW  AR G
Sbjct: 240 QLIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRERLDAWLAARDG 299

Query: 298 EAAIIIGTRSALFTPMRYPGIIILDEEHDASFKQQEGIGYHARDLAVMRGHLESIPVLLG 357
           EA IIIGTRSALFTPM+ PG+II+DEEHD S+KQQEG+ YHARDLA++R H E+IP+LLG
Sbjct: 300 EADIIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRAHQENIPILLG 359

Query: 358 SATPSLETLQNALSGRYQHLSLGSRAGAAEKVRQGIIDIRNQPLKNGLSHGLLNEMRIHL 417
           SATPSLETL NAL+GRY+ L +  RAG A   R   +D+++ PL +G+S  L   +R  L
Sbjct: 360 SATPSLETLHNALTGRYRLLRMNQRAGGARPPRMLRLDVKSLPLDSGISGPLQQAIRQTL 419

Query: 418 DAGNQVLLFLNRRGFAPALLCHECGHLHECDRCDAFFTVHQSLGEIRCHHCGNQYAIPRQ 477
           +AG QVL+FLNRRGFAP LLCH+CG L EC RCDA  TVHQ  G +RCHHCG    +P Q
Sbjct: 420 EAGQQVLVFLNRRGFAPTLLCHDCGWLSECPRCDARMTVHQRSGVLRCHHCGYDERLPHQ 479

Query: 478 CHQCGSTMLMGQGVGTEQLADALAKEFPNYPVVRIDRDTTSRKGALETHLNAIHKGEYKI 537
           C QC    L   G GTE+  + L   FP+YP++R+DRD+T+RK A+    + I +G+  I
Sbjct: 480 CPQCNHVDLRPVGAGTERAEERLKVLFPDYPILRVDRDSTARKDAMHNLFSTIQRGQPSI 539

Query: 538 LVGTQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVSGRAGRARKPGTVL 597
           LVGTQMLAKGHHFP VTLV +LD DG LFS DFRA ER  QL  QV+GRAGRA +PG V+
Sbjct: 540 LVGTQMLAKGHHFPRVTLVAILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVI 599

Query: 598 LQTHQCDNPILRELMHKGYGEFARGQLEERKQALLPPAWHMLLLRAEAHKAEDADAFLAQ 657
           +QTH  D+P+L +L  +GY  FA   L+ER+ A LPP  H+ LLRAEAHK   A+ FL +
Sbjct: 600 IQTHLADHPLLVQLTEQGYFAFAEQALDERRAAGLPPYSHLALLRAEAHKPGQAEGFLDE 659

Query: 658 ---VAQLLPQDEQ---CEIIGPMPAPMDRKAGKFRRQLMFQTKTRGLLQQAFEQALPQIE 711
               A+ L  +++    E++GP+PAPM+R+AG+FR QL+ Q  TR  L +     L  +E
Sbjct: 660 ACAAAERLVAEQRLPGIELLGPVPAPMERRAGRFRAQLLIQANTRAPLHRLISAWLLVLE 719

Query: 712 ALPLAKRCRWSLDRDPQDL 730
            LP  ++ RWSLD DP DL
Sbjct: 720 QLPSGRQVRWSLDVDPVDL 738