Pairwise Alignments

Query, 279 a.a., diaminopimelate epimerase (RefSeq) from Shewanella loihica PV-4

Subject, 267 a.a., diaminopimelate epimerase from Pseudomonas simiae WCS417

 Score =  140 bits (354), Expect = 2e-38
 Identities = 93/273 (34%), Positives = 138/273 (50%), Gaps = 16/273 (5%)

Query: 4   FTKMHGLGNDFMVVDGVTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRI 63
           F KMH  G+DF+++D    +   + +  ++L +R+ GIGF+QL ++      D     + 
Sbjct: 5   FVKMHAHGDDFIIIDRRGLHDPITAKVARQLGNRHTGIGFNQLAVLLDC--DDAAARIKF 62

Query: 64  FNADGSEVEQCGNGARCFA-RFVKSKGLINKQKIKVSTSSGKMTLRLERDGSVTVNMGIP 122
           +N +G+ +  CG+  R  A R +   G      + + T  G +T        ++VNMG P
Sbjct: 63  WNPNGTLLATCGSATRGVADRLMHEAGT---DSVVLRTDRGLLTCARAAGRQISVNMGEP 119

Query: 123 VLEPSRIPFNAKKAEKTYLLQADMPEGMQTFLCGAVSMGNPHCVLEVDDVANADVERIGS 182
            L+ S +P    +A  T  L  D           A SMGNPHC   V+D+   DV  +G 
Sbjct: 120 SLDWSAVPL--AEAMDTLTLPIDGNPA-------ACSMGNPHCTFFVEDLTAVDVATVGP 170

Query: 183 LLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQLQGKLARR 242
            L  H  FP   NV F+QV+D  HI+LR++ERG    L  GS  C AV  G  +G L   
Sbjct: 171 ALEIHPLFPAKTNVHFVQVLDRGHIRLRIWERGGGVPLGSGSCCCGAVVNGIRRGLLDAT 230

Query: 243 VRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDG 275
           V+V   GG++T++W GEG  + +TG  E V  G
Sbjct: 231 VQVHCDGGTVTVHWAGEGAVV-LTGSVEPVMQG 262