Pairwise Alignments

Query, 279 a.a., diaminopimelate epimerase (RefSeq) from Shewanella loihica PV-4

Subject, 274 a.a., Diaminopimelate epimerase from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  394 bits (1012), Expect = e-114
 Identities = 192/276 (69%), Positives = 221/276 (80%), Gaps = 4/276 (1%)

Query: 2   IHFTKMHGLGNDFMVVDGVTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHY 61
           + F+KMHGLGNDFMVVD VTQNV+FSPE I+RLADR+ G+GFDQLL+VEPPYDP+LDFHY
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 62  RIFNADGSEVEQCGNGARCFARFVKSKGLINKQKIKVSTSSGKMTLRLERDGSVTVNMGI 121
           RIFNADGSEV QCGNGARCFARFV+ KGL NK+ I+VST++G+M L +  D  V VNMG 
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 122 PVLEPSRIPFNAKKAEKTYLLQADMPEGMQTFLCGAVSMGNPHCVLEVDDVANADVERIG 181
           P  EPS +PF A KAEKTY+++A      QT LCG VSMGNPHCV++VDDV  A VE +G
Sbjct: 121 PNFEPSAVPFRANKAEKTYIMRA----AEQTILCGVVSMGNPHCVIQVDDVDTAAVETLG 176

Query: 182 SLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQLQGKLAR 241
            +L  HERFP+  N+GFMQVV   HI+LRVYERGA ET ACGSGACAAVAVG  QG LA 
Sbjct: 177 PVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAE 236

Query: 242 RVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQI 277
            VRV+LPGG L I W+G G PL+MTGPA HVYDG I
Sbjct: 237 EVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFI 272