Pairwise Alignments

Query, 329 a.a., DNA-directed RNA polymerase subunit alpha (RefSeq) from Shewanella loihica PV-4

Subject, 329 a.a., DNA-directed RNA polymerase subunit alpha from Serratia liquefaciens MT49

 Score =  567 bits (1462), Expect = e-166
 Identities = 289/329 (87%), Positives = 310/329 (94%), Gaps = 1/329 (0%)

Query: 1   MQGSVTEFLKPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60
           MQGSVTEFLKPRLVDIEQV+ T AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
Sbjct: 1   MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60

Query: 61  IDGVLHEYSSKEGVQEDILEILLNLKGLAVVIEGKDEAMLTLSKSGAGPVTAADITHDGD 120
           IDGVLHEYS+KEGVQEDILEILLNLKGLAV ++GKDE +LTL+KSG GPVTAADITHDGD
Sbjct: 61  IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120

Query: 121 VTIMNPDHVICHLTGNND-ISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDSSFSPV 179
           V I+ P HVICHLT  N  ISMRI+V+RGRGYVPASAR  +E+D+RPIGRLLVD+ +SPV
Sbjct: 121 VEIVKPQHVICHLTDENAAISMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV 180

Query: 180 ARIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEP 239
            RIAYNVEAARVEQRTDLDKLVI+M TNGTIDPEEAIRR+ATILAEQL+AFV+LRDV +P
Sbjct: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240

Query: 240 EQKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 299
           E KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
Sbjct: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300

Query: 300 TEIKDVLASRGLSLGMRLENWPPASLADD 328
           TEIKDVLASRGLSLGMRLENWPPAS+AD+
Sbjct: 301 TEIKDVLASRGLSLGMRLENWPPASIADE 329