Pairwise Alignments

Query, 864 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

Subject, 567 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Variovorax sp. SCN45

 Score =  293 bits (751), Expect = 1e-83
 Identities = 163/325 (50%), Positives = 226/325 (69%), Gaps = 4/325 (1%)

Query: 508 VGTQDKEGFFLNLSNGLNRLVGIADQVIGDVVNMFDGLAKGDLNRQIQGEYQGQFGKLQA 567
           +G     G  + ++  + R +G   Q   DVV     +A GDL+  ++ +   + G L  
Sbjct: 205 IGIVVSVGLGMVVARLMGRQLGGEPQYAADVVGR---IADGDLSMAVEADAAHE-GSLLH 260

Query: 568 DANATAAKLTEVLDGINQSANTVTSGAEEIAQGNADLSQRTEEQAASLEETASSMEEMTA 627
                  +LT ++  I  S++ +   + +IA GN DLS RTE+QA+SLE+TA+SMEE+T+
Sbjct: 261 SIKLMQLQLTSIVGKIKDSSDVIADASGQIASGNQDLSSRTEQQASSLEQTAASMEELTS 320

Query: 628 TVTQSAQNATVANQLAQEANTKAAHGGKVVEQAVTAMEAINESSKRIADIIGVIDEIAFQ 687
           TV Q+A NA  ANQLA  A+  A  GG VV Q VT M +IN SSK+I DIIGVID IAFQ
Sbjct: 321 TVKQNADNARQANQLAVSASEVAVKGGSVVSQVVTTMGSINASSKKIVDIIGVIDGIAFQ 380

Query: 688 TNLLALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAGAAKEIKELIRDSVTKVTDGTQL 747
           TN+LALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEIK LI DSV KV +G++ 
Sbjct: 381 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIGDSVEKVAEGSKQ 440

Query: 748 VNQSGETLEDIVQAVTKVADMISQISIASDQQSAGIQEVNKAISQMDEMTQQNAALVEQV 807
           V ++G T+++IV +V +V D++ +I+ AS +Q++GI+++N+AI+QMD++TQQNAALVE+ 
Sbjct: 441 VEEAGRTMDEIVGSVRRVTDIMGEITAASQEQTSGIEQINQAITQMDQVTQQNAALVEEA 500

Query: 808 SAAGDAMAEQARNMKSQLGFFQSQA 832
           SAA  ++ EQA ++   +  F+  A
Sbjct: 501 SAAAQSLQEQAGSLVQAVSTFKLDA 525



 Score = 36.2 bits (82), Expect = 6e-06
 Identities = 62/313 (19%), Positives = 120/313 (38%), Gaps = 81/313 (25%)

Query: 349 QDVTEKLAKEAKERQLAAEN-----ARIKQALDNV-SSNTMVADADLNIIYMNKAVSQMF 402
           QD++ +  ++A   +  A +     + +KQ  DN   +N +   A    +     VSQ  
Sbjct: 295 QDLSSRTEQQASSLEQTAASMEELTSTVKQNADNARQANQLAVSASEVAVKGGSVVSQ-- 352

Query: 403 KQAQNDIAKDLPNFDASNLMGVNIDNFHKNPSHQRNLLKTLTTTYTSQLKVGGRTFQVVA 462
                 +   + + +AS+   V+I       + Q N+L        ++    GR F VVA
Sbjct: 353 ------VVTTMGSINASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 406

Query: 463 NPIRDPNGESIGTVVEWADRTAEVAIEHEIDSIIGAASKGDLSLRVGTQDKEGFFLNLSN 522
           + +R             A R+A  A   EI ++IG                         
Sbjct: 407 SEVR-----------SLAQRSAAAA--KEIKTLIG------------------------- 428

Query: 523 GLNRLVGIADQVIGDVVNMFDGLAKGDLNRQIQGEYQGQFGKLQADANATAAKLTEVLDG 582
                            +  + +A+G  ++Q++     + G+   +   +  ++T+++  
Sbjct: 429 -----------------DSVEKVAEG--SKQVE-----EAGRTMDEIVGSVRRVTDIMGE 464

Query: 583 INQSANTVTSGAEEIAQGNADLSQRTEEQAASLEE---TASSMEEMTATVTQ--SAQNAT 637
           I  ++   TSG E+I Q    + Q T++ AA +EE    A S++E   ++ Q  S     
Sbjct: 465 ITAASQEQTSGIEQINQAITQMDQVTQQNAALVEEASAAAQSLQEQAGSLVQAVSTFKLD 524

Query: 638 VANQLAQEANTKA 650
            ++Q A  A  +A
Sbjct: 525 ASHQAAPRARAEA 537



 Score = 26.2 bits (56), Expect = 0.006
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 102 HANQGNQAQLRAL--EICQANVMLADPQGNINFLNQSLRQTLEKAESDIQQAIASF-SVD 158
           H+ +  Q QL ++  +I  ++ ++AD  G I   NQ L    E+  S ++Q  AS   + 
Sbjct: 260 HSIKLMQLQLTSIVGKIKDSSDVIADASGQIASGNQDLSSRTEQQASSLEQTAASMEELT 319

Query: 159 TLIGTNMDTFHQ 170
           + +  N D   Q
Sbjct: 320 STVKQNADNARQ 331