Pairwise Alignments

Query, 366 a.a., DNA polymerase III, beta subunit (RefSeq) from Shewanella loihica PV-4

Subject, 366 a.a., DNA polymerase III subunit beta from Escherichia coli ECRC98

 Score =  420 bits (1080), Expect = e-122
 Identities = 215/366 (58%), Positives = 275/366 (75%)

Query: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAELQ 60
           MKF+++R+ LLKPLQ VSG +  R  LPIL NLL++V+  +L LTGTDLE+E+V +  L 
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 61  GEVQEGRTTVPAKKFLDIVKSLPDQVELKIEQQDNRLLLRSGRSRFTLATLPAEEYPNVD 120
              + G TTVPA+KF DI + LP+  E+ ++ +  R+L+RSGRSRF+L+TLPA ++PN+D
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120

Query: 121 AFQADIEFTLKQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALS 180
            +Q+++EFTL Q T+K LI+ATQFSMA+QDVRYYLNG+L ETEG  LR +ATDGHRLA+ 
Sbjct: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180

Query: 181 HRMVQDSLPEKQVIVPRKGVLELQRLFEGEDLDVTLSIGENAIRATTQSAVFTSKLVDGR 240
              +  SLP   VIVPRKGV+EL R+ +G D  + + IG N IRA     +FTSKLVDGR
Sbjct: 181 SMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGR 240

Query: 241 FPDYRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLEQNLIKITANNPEQE 300
           FPDYRRVLPK  DK + A  + LKQA  RA+ILSNEKFRGVR+ + +N +KITANNPEQE
Sbjct: 241 FPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE 300

Query: 301 EAEEILDIEYDNAPLEIGFNVSYLLDVLNNLPSDDVRITLIDGNSSALIENHVEEDSMYV 360
           EAEEILD+ Y  A +EIGFNVSY+LDVLN L  ++VR+ L D  SS  IE+   + + YV
Sbjct: 301 EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYV 360

Query: 361 VMPMRL 366
           VMPMRL
Sbjct: 361 VMPMRL 366