Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

 Score = 49.7 bits (117), Expect = 3e-11
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 16/146 (10%)

Query: 26  VRDEEAALDLVQDAMMRLAEKYGDRPAEELPMLFQRILQNAIRDYYRRSKVRSMWTTLLS 85
           VRD + A DLVQ++ +RLAEK      +       R   N + D+ R+   R        
Sbjct: 25  VRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLIDHIRQEARRK------- 77

Query: 86  SLTPGDDEDSDPLDTL-EVEGKAGDSPEGSLEQSQVLAVIEAEISRLPGRQREAFLMRYW 144
                   D+ P + L E+E +       ++ Q Q  A+ +A ++ LP R ++ F +   
Sbjct: 78  -------TDAVPHEALAEIEDEVAGLEAQAMAQQQRQALKQA-LAELPERTQQIFRLNRI 129

Query: 145 EDMDVAETAAAMGCSEGSVKTHCSRA 170
           E M  A+ A  +  S+ SV+ H ++A
Sbjct: 130 EGMTHAQVARHLDISDSSVQKHLAKA 155